Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   HB763_RS17170 Genome accession   NZ_CP050476
Coordinates   273429..274730 (+) Length   433 a.a.
NCBI ID   WP_255986541.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC012     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 268429..279730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB763_RS17155 (HB763_17170) - 269330..269428 (+) 99 Protein_235 ribosome biogenesis GTPase YlqF -
  HB763_RS17160 (HB763_17175) - 269558..271552 (-) 1995 WP_255986540.1 hypothetical protein -
  HB763_RS17165 (HB763_17180) ylqF 272204..273139 (+) 936 WP_255903264.1 ribosome biogenesis GTPase YlqF -
  HB763_RS17170 (HB763_17185) cqsA 273429..274730 (+) 1302 WP_255986541.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HB763_RS17175 (HB763_17190) cqsS 274837..276882 (-) 2046 WP_255987047.1 response regulator Regulator
  HB763_RS17180 (HB763_17195) - 277186..277803 (+) 618 WP_255986542.1 HAD family phosphatase -
  HB763_RS17185 (HB763_17200) - 278143..278691 (-) 549 WP_005426812.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48805.74 Da        Isoelectric Point: 6.3990

>NTDB_id=433179 HB763_RS17170 WP_255986541.1 273429..274730(+) (cqsA) [Vibrio campbellii strain LJC012]
MRSLQAHANLCNLTNDTELILVKLYNCQRWRFPVLRRELIMSDKPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKR
PQQGAVVMQSNDYLSLSHNLQIQQAHRDAICEHDDNVVMSAIFLQDDDSKPAFETQLADYIGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMNHLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAKTFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRL
EKTLEVIRSADDKRAMLFNRAKELRTGLKQIGFHIRSESQIVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNI
IRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=433179 HB763_RS17170 WP_255986541.1 273429..274730(+) (cqsA) [Vibrio campbellii strain LJC012]
ATGCGGAGTTTGCAGGCGCACGCAAACTTATGCAACTTGACTAATGACACCGAGCTCATATTGGTCAAACTATATAACTG
TCAGCGCTGGCGTTTTCCTGTGTTACGAAGAGAACTTATTATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTG
TTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGAGCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGA
CCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACTTGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCG
TGATGCTATCTGCGAGCACGATGATAACGTTGTCATGTCTGCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTG
AAACGCAGCTCGCGGATTATATCGGTATGGGCAGTTGCCTATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTA
CAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGATTTCTTTGCACACATGTCTTTGTGGGAAGGGATTCGAGCGGC
AGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAACCATTTGCGCAAGCAGATACAGCGTCACGGCTCTGGCGTTA
TCGTTGTGGATTCAGTCTATAGCACGATAGGTACGATCGCCCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACCCATGGGCCAAATGGTTCTGGCTTGGTGAAAGCATTGGAACT
CACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAAACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAA
AGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCTGCCATTTTTAGTTCGACGGTTCTGCCACAAGAGATCGTTCGACTT
GAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAACGAGCCATGCTGTTTAACCGCGCTAAAGAGCTCAGAACAGG
CCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCGCAAATTGTGGCGTTAGAATGCGGTAGTGAGCGAAATACGGAAC
GAGTGCGTGACTTCTTAGAAGAACGAAACGTATTTGGCGCTGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATT
ATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACATTGACCACGTCTTGACGGCTTGTCAGGAAGCGTATAACCA
CCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(87-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.179

90.069

0.515