Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   HB762_RS26075 Genome accession   NZ_CP050471
Coordinates   2002817..2003998 (-) Length   393 a.a.
NCBI ID   WP_038862896.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC013     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1997817..2008998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB762_RS26060 (HB762_25895) - 1998855..1999403 (+) 549 WP_005426812.1 GNAT family N-acetyltransferase -
  HB762_RS26065 (HB762_25900) - 1999743..2000360 (-) 618 WP_010647035.1 HAD family phosphatase -
  HB762_RS26070 (HB762_25905) cqsS 2000665..2002710 (+) 2046 WP_255903262.1 response regulator Regulator
  HB762_RS26075 (HB762_25910) cqsA 2002817..2003998 (-) 1182 WP_038862896.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HB762_RS26080 (HB762_25915) ylqF 2004407..2005342 (-) 936 WP_255903264.1 ribosome biogenesis GTPase YlqF -
  HB762_RS26085 (HB762_25920) - 2005994..2007988 (+) 1995 WP_255903266.1 hypothetical protein -
  HB762_RS26090 (HB762_25925) - 2008118..2008216 (-) 99 Protein_1936 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43997.03 Da        Isoelectric Point: 5.9813

>NTDB_id=433134 HB762_RS26075 WP_038862896.1 2002817..2003998(-) (cqsA) [Vibrio campbellii strain LJC013]
MSDKPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQQGAVVMQSNDYLSLSHNLQIQQAHRDAICEHDDNVVMS
AIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAK
TFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRLEKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=433134 HB762_RS26075 WP_038862896.1 2002817..2003998(-) (cqsA) [Vibrio campbellii strain LJC013]
ATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGA
GCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGACCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACT
TGTCGTTGTCCCACAATCTACAGATTCAACAGGCACATCGTGATGCTATCTGCGAGCACGATGATAACGTTGTCATGTCT
GCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTGAAACGCAGCTCGCGGATTATGTCGGTATGGGCAGTTGCCT
ATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTACAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGATT
TCTTTGCACACATGTCTTTGTGGGAAGGGATTCGAGCGGCAGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAAC
CATTTGCGCAAGCAGATACAGCGTCACGGCTCTGGCGTTATCGTTGTGGATTCAGTCTATAGCACGATAGGTACGATCGC
CCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGATTGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACCC
ATGGACCAAATGGTTCTGGCTTGGTGAAAGCATTAGAACTCACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAA
ACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAAAGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCAT
CTTTAGCTCGACGGTCCTGCCACAAGAGATCGTTCGACTTGAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGC
GAACCATGCTGTTCAATCGAGCTAAGGAGCTCAGAACAGGCCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCGCAA
ATTGTGGCGTTAGAATGCGGTAGTGAGCGAAATACGGAACGAGTACGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGC
TGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATTATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACA
TTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCACCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.179

99.237

0.567