Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   HB762_RS26070 Genome accession   NZ_CP050471
Coordinates   2000665..2002710 (+) Length   681 a.a.
NCBI ID   WP_255903262.1    Uniprot ID   A0AAE9N3N9
Organism   Vibrio campbellii strain LJC013     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1995665..2007710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB762_RS26050 (HB762_25885) dcuC 1995687..1997054 (-) 1368 WP_255903257.1 anaerobic C4-dicarboxylate transporter DcuC -
  HB762_RS26055 (HB762_25890) - 1997437..1998561 (-) 1125 WP_255903260.1 fatty acid desaturase -
  HB762_RS26060 (HB762_25895) - 1998855..1999403 (+) 549 WP_005426812.1 GNAT family N-acetyltransferase -
  HB762_RS26065 (HB762_25900) - 1999743..2000360 (-) 618 WP_010647035.1 HAD family phosphatase -
  HB762_RS26070 (HB762_25905) cqsS 2000665..2002710 (+) 2046 WP_255903262.1 response regulator Regulator
  HB762_RS26075 (HB762_25910) cqsA 2002817..2003998 (-) 1182 WP_038862896.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HB762_RS26080 (HB762_25915) ylqF 2004407..2005342 (-) 936 WP_255903264.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 77879.75 Da        Isoelectric Point: 5.5065

>NTDB_id=433133 HB762_RS26070 WP_255903262.1 2000665..2002710(+) (cqsS) [Vibrio campbellii strain LJC013]
MDAIRKVYQYAEPNLSLVGWMGFIGFPIYYIVWEFMFPQPYENLPLRILCSILFFGIIYRNRTPFEWRGFLPAYYQVVTT
LCLPCFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHITSVMFVQTFVGIGLATFFAWVAQGFHLELTMDWTHVPIFLFIY
LFGNLFYFRNQVEHEAKVSIAKSFGAGIAHEMRNPLSGLLTSIDVIRSVLPNPKEGKKEQYTLSDEDVTLLREVSSDAMN
IIHSGNETIDLLLTSIDENRVSRSTFKKHSAQSVVESAIESFSYKRSTDRFAISLDVRSEFDFLGSDTLLKYVMYNLFKN
AFHHRSSEDFHIHVTMYSDEFANQIVVTDNGSGIAPEVLQSIFQDFYTTGKSGNYGLGLPFCKKVMRSFGGDIRCQSEVG
EWSQFTMTFPTIGSRAVKEIKSELTKLKTILFVSEQNILVSKVTDIARFMGFELTVLDVPAVLKKKEYEFEFDLILIDME
SLDARGSHIDKVESLLSFTEARIVYMFEHHPIQRARSVSFEPIWVETQAWLLNTRATIDRLLYDANYVVPSMPAKPLDST
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNENNVDLILMDIEMPVMDGVEASRQIRGSNKAYASVPI
IAHTGDSSPITLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=433133 HB762_RS26070 WP_255903262.1 2000665..2002710(+) (cqsS) [Vibrio campbellii strain LJC013]
ATGGACGCGATTCGCAAAGTATATCAGTACGCAGAACCCAACCTTAGCCTCGTAGGATGGATGGGCTTCATAGGCTTTCC
TATTTACTACATCGTTTGGGAGTTCATGTTCCCGCAGCCATACGAAAACCTACCGCTTCGTATTCTTTGCTCAATATTAT
TCTTCGGCATCATTTATCGTAATCGTACGCCATTTGAGTGGCGTGGATTTTTACCCGCCTATTATCAAGTGGTCACAACG
CTCTGCTTACCTTGCTTCTTCTTTTACATGTTGCTGATGAACAATTGGTCGAATGTTTGGGTGATGTCGTTTATGTCGGC
GATTTTTTTGCACATACTGCTCGTGCATATCACATCGGTGATGTTTGTTCAGACATTTGTGGGAATTGGTCTTGCGACGT
TTTTTGCTTGGGTAGCACAGGGGTTTCACCTCGAACTCACCATGGATTGGACGCACGTACCGATCTTCTTGTTTATTTAT
CTTTTTGGTAACTTGTTCTACTTCCGAAACCAGGTAGAGCATGAAGCAAAAGTCTCAATCGCAAAGTCTTTTGGGGCGGG
TATCGCCCATGAAATGCGAAACCCACTCAGCGGTTTATTAACTTCTATCGATGTCATTCGATCCGTGTTGCCAAACCCGA
AAGAGGGCAAGAAAGAGCAGTACACGTTAAGTGATGAAGATGTGACACTGTTACGCGAAGTCAGCAGTGACGCAATGAAC
ATCATTCATTCCGGAAACGAAACCATTGATTTGCTTCTTACTTCAATTGATGAGAACCGTGTTTCTCGCTCGACATTTAA
AAAACACTCTGCACAATCTGTCGTTGAGAGTGCGATTGAAAGTTTCAGTTACAAACGATCGACAGACCGTTTTGCTATCT
CCTTGGATGTAAGAAGTGAGTTCGATTTCTTGGGCAGCGATACATTGCTTAAGTATGTGATGTACAACTTGTTCAAGAAC
GCCTTCCACCACCGTAGTTCAGAAGACTTCCACATACACGTCACCATGTACAGTGATGAATTTGCCAACCAAATTGTGGT
GACTGATAACGGTTCGGGCATTGCACCAGAAGTTCTTCAAAGTATTTTCCAAGATTTCTACACTACGGGTAAGTCAGGAA
ACTATGGCCTTGGATTGCCTTTCTGTAAGAAAGTGATGCGTTCATTTGGTGGTGATATTCGTTGTCAATCAGAAGTCGGC
GAGTGGTCTCAGTTCACGATGACTTTCCCTACGATTGGCTCAAGAGCAGTCAAAGAGATTAAGAGTGAGCTAACCAAGCT
AAAAACGATTTTGTTTGTGAGTGAGCAAAACATCTTAGTTTCGAAAGTGACGGACATTGCTCGTTTTATGGGATTCGAAC
TCACGGTTCTCGATGTTCCTGCGGTTCTTAAAAAGAAAGAATACGAGTTCGAGTTTGATTTGATCCTGATCGACATGGAG
AGTTTAGACGCCCGTGGCAGCCATATAGATAAGGTTGAGTCGTTACTGTCGTTCACTGAAGCTCGCATTGTTTACATGTT
TGAGCACCATCCAATTCAAAGAGCGAGAAGCGTTTCTTTTGAACCTATTTGGGTAGAGACACAAGCCTGGCTTCTGAATA
CTCGAGCGACCATCGACCGTTTACTGTATGACGCTAATTATGTTGTTCCATCGATGCCAGCGAAGCCGCTCGATTCAACA
AACAAGCGAACCATTATGGTGGTTGACGATAATGAGTCTTTACGCAAGTTTACGGCCATGCTGCTTGAGAAGCAGGGTTT
TGAAGTGATCCAAACCGAGGATGGGCTGCAGGCAATCAACGCATTGAATGAGAACAATGTTGACTTAATCCTAATGGACA
TCGAAATGCCAGTGATGGATGGTGTAGAAGCATCTCGTCAAATCAGAGGTTCAAATAAGGCGTATGCTTCGGTGCCTATT
ATTGCGCATACTGGTGATAGCTCACCGATAACACTCGACAAGATTGGTTCATCTGGCATGTCGGATTTCATCGTTAAACC
TGCGGATAAGAACAGGTTGTTCGACAAGATTGCGAACTGGATTTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-410)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.175

100

0.485