Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   HB762_RS14810 Genome accession   NZ_CP050470
Coordinates   3125357..3126373 (+) Length   338 a.a.
NCBI ID   WP_255899045.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC013     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3120357..3131373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB762_RS14795 (HB762_14700) - 3120721..3121449 (-) 729 WP_255899037.1 redoxin family protein -
  HB762_RS14800 (HB762_14705) oxyR 3121624..3122532 (+) 909 WP_255899040.1 DNA-binding transcriptional regulator OxyR -
  HB762_RS14805 (HB762_14710) - 3122611..3125178 (-) 2568 WP_255899043.1 penicillin-binding protein 1A -
  HB762_RS14810 (HB762_14715) pilM 3125357..3126373 (+) 1017 WP_255899045.1 type IV pilus biogenesis protein PilM Machinery gene
  HB762_RS14815 (HB762_14720) pilN 3126357..3126932 (+) 576 WP_005432710.1 PilN domain-containing protein Machinery gene
  HB762_RS14820 (HB762_14725) pilO 3126925..3127518 (+) 594 WP_255899047.1 type 4a pilus biogenesis protein PilO Machinery gene
  HB762_RS14825 (HB762_14730) pilP 3127508..3128023 (+) 516 WP_255899049.1 pilus assembly protein PilP Machinery gene
  HB762_RS14830 (HB762_14735) pilQ 3128058..3129812 (+) 1755 WP_255901950.1 type IV pilus secretin PilQ Machinery gene
  HB762_RS14835 (HB762_14740) aroK 3130001..3130519 (+) 519 WP_010443904.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37876.29 Da        Isoelectric Point: 6.3141

>NTDB_id=433110 HB762_RS14810 WP_255899045.1 3125357..3126373(+) (pilM) [Vibrio campbellii strain LJC013]
MDKLLVTGIDIGHNSLKAVVLKPNGNSYALLGYKEIILKEGIVAENNTINHQEIVKTLKEMKKELPFRARKVAISVPDNA
VISKKLQIEQNLEESEKEFAVVQAFSHQSPFPVEELSLDFIKVDTDEQMRGTDSYQVFATRKDVVETRVEALQKSGLKPV
LVDVHSQSLGHMWKLVAERFPEKNKYCLLDIGSLNSSFTMFTEQGELFHKEFPCGSRTTGSLFQQDPLADDAQVATEQFN
RQIVERVKRQMQLYTSINGSQDIKGVWLSGEGATTPMLAEELSSQLALECELLNPLGLFEMKVSKRKRRAADWQHFTAAA
GLAVRGIQWLGGDNAVSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=433110 HB762_RS14810 WP_255899045.1 3125357..3126373(+) (pilM) [Vibrio campbellii strain LJC013]
ATGGATAAGCTATTAGTTACGGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTGGTACTTAAACCCAATGGCAACAG
TTACGCACTACTGGGTTACAAAGAAATAATACTTAAGGAAGGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAAGACCCTTAAAGAGATGAAAAAAGAGCTACCTTTTCGTGCTCGAAAGGTCGCAATTTCAGTTCCAGATAATGCT
GTGATCAGTAAAAAGCTGCAGATAGAGCAGAACTTAGAAGAGAGTGAAAAGGAGTTTGCTGTTGTGCAAGCCTTCTCACA
TCAATCTCCATTCCCCGTGGAAGAGCTGAGTCTTGACTTCATCAAGGTTGATACGGATGAGCAGATGCGAGGCACTGACA
GTTATCAGGTCTTCGCGACTCGTAAAGACGTGGTAGAAACCCGAGTTGAGGCATTGCAAAAATCAGGCTTGAAACCAGTA
CTGGTGGACGTGCACTCACAAAGTCTTGGTCATATGTGGAAATTGGTAGCGGAACGTTTTCCTGAAAAGAACAAGTATTG
TTTACTGGACATTGGTTCTTTGAACAGTTCTTTCACGATGTTCACCGAACAAGGTGAATTGTTTCATAAAGAATTTCCCT
GCGGTTCTCGCACTACGGGCAGTTTGTTTCAACAAGATCCATTAGCAGACGATGCACAAGTGGCAACGGAGCAATTTAAT
CGACAAATCGTTGAGCGTGTTAAACGTCAGATGCAGCTCTATACCTCAATTAATGGAAGCCAGGATATCAAAGGCGTTTG
GCTTTCGGGAGAGGGCGCTACAACACCTATGTTGGCCGAGGAGCTGTCTAGCCAGTTGGCACTAGAGTGTGAACTGCTTA
ATCCACTTGGTTTGTTTGAAATGAAGGTCTCTAAACGCAAACGTCGTGCCGCGGATTGGCAACACTTCACTGCTGCAGCC
GGACTGGCTGTACGTGGTATTCAGTGGCTAGGAGGTGACAATGCTGTATCACATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

98.225

100

0.982
  pilM Vibrio cholerae strain A1552

49.415

100

0.5