Detailed information NTG0433083

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HB762_RS00055
• Genome accession: NZ_CP050470
• Coordinates: 6599..7468 (-)
• Length: 289 a.a.
• NCBI ID: WP_255899277.1
• Uniprot ID: A0AAE9SJX1
• Organism: Vibrio campbellii strain LJC013
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1599..12468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB762_RS00020 (HB762_00020)	rpsP	2631..2879 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
HB762_RS00025 (HB762_00025)	rimM	2907..3455 (+)	549	WP_005534055.1	ribosome maturation factor RimM	-
HB762_RS00030 (HB762_00030)	trmD	3483..4226 (+)	744	WP_005534054.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
HB762_RS00035 (HB762_00035)	rplS	4268..4621 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
HB762_RS00040 (HB762_00040)	yacG	4959..5159 (-)	201	WP_012128882.1	DNA gyrase inhibitor YacG	-
HB762_RS00045 (HB762_00045)	zapD	5216..5956 (-)	741	WP_255899271.1	cell division protein ZapD	-
HB762_RS00050 (HB762_00050)	coaE	5984..6598 (-)	615	WP_255899274.1	dephospho-CoA kinase	-
HB762_RS00055 (HB762_00055)	pilD	6599..7468 (-)	870	WP_255899277.1	A24 family peptidase	Machinery gene
HB762_RS00060 (HB762_00060)	pilC	7541..8764 (-)	1224	WP_255899279.1	type II secretion system F family protein	Machinery gene
HB762_RS00065 (HB762_00065)	pilB	8799..10484 (-)	1686	WP_255899281.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HB762_RS00070 (HB762_00070)	pilA	10490..10948 (-)	459	WP_017189133.1	pilin	Machinery gene
HB762_RS00075 (HB762_00075)	nadC	11214..12101 (-)	888	WP_010643264.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32514.82 Da
• Isoelectric Point: 7.8754

>NTDB_id=433083 HB762_RS00055 WP_255899277.1 6599..7468(-) (pilD) [Vibrio campbellii strain LJC013]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPRIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCPQCGTPIRIR
DNIPVISWLLLKGKCHKCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=433083 HB762_RS00055 WP_255899277.1 6599..7468(-) (pilD) [Vibrio campbellii strain LJC013]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTAGTTATCTACCGTTTACCCAGGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCCGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTAATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAAATGCCAAGCGCCCATCAGTGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACCCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
AGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGCTGGGTTGGCAATCTCTACCGATGATTATTTTGCTCTCTTCGGTGGTTGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.578	100	0.976
pilD	Vibrio cholerae strain A1552	75.694	99.654	0.754
pilD	Acinetobacter nosocomialis M2	53.137	93.772	0.498
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443