Detailed information NTG0043307

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: SCIM_RS03970
• Genome accession: NC_018073
• Coordinates: 825430..826662 (+)
• Length: 410 a.a.
• NCBI ID: WP_003072918.1
• Uniprot ID: -
• Organism: Streptococcus intermedius JTH08
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 820430..831662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCIM_RS03940 (SCIM_0706)	-	821103..821945 (+)	843	WP_003077877.1	hypothetical protein	-
SCIM_RS03945	-	821984..822247 (+)	264	WP_003024913.1	chorismate mutase	-
SCIM_RS03950 (SCIM_0707)	-	822263..823480 (+)	1218	WP_003077893.1	voltage-gated chloride channel family protein	-
SCIM_RS03955 (SCIM_0708)	-	823566..824405 (+)	840	WP_003077918.1	thymidylate synthase	-
SCIM_RS03960 (SCIM_0709)	-	824691..825203 (+)	513	WP_003072921.1	dihydrofolate reductase	-
SCIM_RS09810	-	825203..825376 (+)	174	WP_003024903.1	hypothetical protein	-
SCIM_RS03970 (SCIM_0710)	clpX	825430..826662 (+)	1233	WP_003072918.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
SCIM_RS03975 (SCIM_0711)	yihA	826675..827262 (+)	588	WP_003068868.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
SCIM_RS03980 (SCIM_0712)	-	827385..828092 (+)	708	WP_003077899.1	glucosaminidase domain-containing protein	-
SCIM_RS03985 (SCIM_0713)	-	828268..829065 (+)	798	WP_003077927.1	formate/nitrite transporter family protein	-
SCIM_RS03990 (SCIM_0714)	-	829283..831019 (+)	1737	WP_003077883.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45705.19 Da
• Isoelectric Point: 4.3968

>NTDB_id=43307 SCIM_RS03970 WP_003072918.1 825430..826662(+) (clpX) [Streptococcus intermedius JTH08]
MPTNRTSEMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDNREEEDDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNKAIDENSSYMQEIISEDIQKFGLIPELIGRLPVFAALEPLTVEDLVR
ILREPKNALVKQYQTLLSYDDVTLEFDDDALQEIANKAIERKTGARGLRSIIEETMMDIMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide

• Length: 1233 bp

>NTDB_id=43307 SCIM_RS03970 WP_003072918.1 825430..826662(+) (clpX) [Streptococcus intermedius JTH08]
ATGCCTACAAATCGTACGAGCGAAATGATGGTTTATTGTTCTTTTTGTGGTAAAAGTCAAGAAGAAGTTCAAAAAATTAT
TGCAGGAAATAATGCATTTATTTGTAACGAATGTGTGGAATTAGCACAAGAAATTATTAGAGAAGAATTAGCAGAAGAAG
TCTTGGCAGACTTGTCGGAAGTACCAAAACCACAAGAATTGCTTAACATTTTAAATCACTATGTAATAGGGCAAGATCGT
GCAAAGCGAGCGCTGGCTGTTGCTGTATACAATCACTATAAACGTATCAATTTTCACGATAATCGTGAAGAAGAGGATGA
TGTCGAATTACAAAAATCCAATATTCTTATGATTGGTCCAACCGGTTCTGGTAAGACTTTTCTTGCTCAAACTTTAGCGA
AAAGTCTAAATGTTCCCTTTGCGATTGCAGATGCAACGGCTTTGACAGAAGCTGGATATGTCGGAGAAGATGTTGAAAAC
ATTCTCTTAAAACTCTTGCAAGCTGCAGATTTTAATATTGAGCGTGCAGAACGTGGCATTATCTATGTAGATGAGATTGA
CAAAATTGCAAAGAAAAGCGAAAATGTCTCTATTACTCGTGATGTGTCTGGTGAAGGCGTTCAGCAAGCTTTGCTTAAAA
TCATTGAAGGGACTGTAGCTAGTGTACCTCCTCAAGGCGGTCGCAAACATCCACAGCAAGAAATGATTCAAGTGGATACT
AAGAATATTCTTTTTATCGTTGGTGGTGCTTTTGACGGAATTGAAGAAATTGTCAAACAACGTCTAGGTGAAAAGATTAT
TGGTTTTGGTCAAAATAACAAAGCTATTGATGAAAATAGTTCTTATATGCAAGAAATTATTTCCGAAGATATTCAAAAAT
TTGGACTCATCCCCGAATTGATTGGTCGTTTACCAGTGTTTGCTGCGCTTGAGCCTTTGACAGTTGAGGATTTGGTACGA
ATTCTTCGTGAGCCAAAGAACGCCCTAGTAAAACAATATCAAACTCTCCTTTCTTATGATGATGTTACATTAGAGTTTGA
TGATGATGCCCTCCAAGAAATTGCCAATAAGGCTATTGAACGTAAGACAGGTGCTCGTGGATTGCGTTCAATTATTGAAG
AAACTATGATGGATATCATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAATTAGTGCGGATTACCAAGGAAGCAGTTGAT
GGAACAGATAAACCAATTTTAGAAACAGCTTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (313-390)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	86.341	100	0.863
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.706	98.049	0.576