Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   HB760_RS12520 Genome accession   NZ_CP050463
Coordinates   2692019..2692636 (+) Length   205 a.a.
NCBI ID   WP_255899287.1    Uniprot ID   A0AAE9N0M0
Organism   Vibrio campbellii strain LJC015     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2687019..2697636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB760_RS12500 (HB760_12415) - 2687301..2688218 (-) 918 WP_255901957.1 ABC transporter ATP-binding protein -
  HB760_RS12505 (HB760_12420) - 2688458..2690128 (-) 1671 WP_255899289.1 SulP family inorganic anion transporter -
  HB760_RS12510 (HB760_12425) can 2690412..2691080 (+) 669 WP_005531727.1 carbonate dehydratase -
  HB760_RS12515 (HB760_12430) hpt 2691167..2691697 (-) 531 WP_005428667.1 hypoxanthine phosphoribosyltransferase -
  HB760_RS12520 (HB760_12435) opaR 2692019..2692636 (+) 618 WP_255899287.1 transcriptional regulator OpaR Regulator
  HB760_RS12525 (HB760_12440) lpdA 2693006..2694436 (-) 1431 WP_005531721.1 dihydrolipoyl dehydrogenase -
  HB760_RS12530 (HB760_12445) aceF 2694680..2696578 (-) 1899 WP_038862976.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23776.06 Da        Isoelectric Point: 6.0781

>NTDB_id=433009 HB760_RS12520 WP_255899287.1 2692019..2692636(+) (opaR) [Vibrio campbellii strain LJC015]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERSEVCDKHEPE
DLANLFHGICYSIFVQANRSKSETELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=433009 HB760_RS12520 WP_255899287.1 2692019..2692636(+) (opaR) [Vibrio campbellii strain LJC015]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGCCGTGGTGGTCACGCGGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCAGTTCTCTAACTTCTTGTCG
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTATTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCGATCGAGCGCAGTGAAGTTTGTGACAAACATGAACCGGAA
GACTTGGCGAATCTATTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAGCGAAACTGAGTTAAC
GAACCTAGTAAGCGCATACTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

94.118

99.512

0.937
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693