Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ILQ45_RS12390 Genome accession   NZ_CP062739
Coordinates   2436355..2437011 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli O157:H7 strain Z1723     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2431355..2442011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILQ45_RS12360 (ILQ45_12365) dcyD 2432234..2433220 (+) 987 WP_001128225.1 D-cysteine desulfhydrase -
  ILQ45_RS12365 (ILQ45_12370) tcyL 2433235..2433903 (+) 669 WP_001158226.1 cystine ABC transporter permease -
  ILQ45_RS12370 (ILQ45_12375) tcyN 2433900..2434652 (+) 753 WP_001273005.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ILQ45_RS12375 (ILQ45_12380) sdiA 2434882..2435604 (+) 723 WP_001154288.1 transcriptional regulator SdiA -
  ILQ45_RS12380 (ILQ45_12385) yecF 2435672..2435896 (-) 225 WP_000106479.1 DUF2594 family protein YecF -
  ILQ45_RS12385 (ILQ45_12390) yecU 2435883..2436059 (-) 177 WP_001302050.1 protein YecU -
  ILQ45_RS29705 - 2436097..2436213 (-) 117 WP_001302039.1 hypothetical protein -
  ILQ45_RS12390 (ILQ45_12395) letA 2436355..2437011 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ILQ45_RS12395 (ILQ45_12400) uvrC 2437008..2438840 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ILQ45_RS12400 (ILQ45_12405) pgsA 2438897..2439445 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ILQ45_RS12420 (ILQ45_12425) - 2440436..2440717 (+) 282 WP_001303543.1 hypothetical protein -
  ILQ45_RS12425 (ILQ45_12430) - 2440738..2440932 (+) 195 WP_115801851.1 hypothetical protein -
  ILQ45_RS12430 (ILQ45_12435) - 2440874..2442004 (+) 1131 WP_072612814.1 IS30-like element IS30 family transposase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=432895 ILQ45_RS12390 WP_000611328.1 2436355..2437011(+) (letA) [Escherichia coli O157:H7 strain Z1723]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=432895 ILQ45_RS12390 WP_000611328.1 2436355..2437011(+) (letA) [Escherichia coli O157:H7 strain Z1723]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTAAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CATTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACGAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482