Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   G4G31_RS24780 Genome accession   NZ_CP050451
Coordinates   126060..126473 (-) Length   137 a.a.
NCBI ID   WP_229425250.1    Uniprot ID   -
Organism   Massilia sp. Se16.2.3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 121060..131473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G31_RS00570 (G4G31_00570) - 121214..124144 (-) 2931 WP_182989852.1 ribonucleoside-diphosphate reductase subunit alpha -
  G4G31_RS00575 (G4G31_00575) - 124844..125014 (-) 171 WP_182989853.1 hypothetical protein -
  G4G31_RS24770 - 125015..125701 (-) 687 WP_308621974.1 helix-turn-helix domain-containing protein -
  G4G31_RS24775 - 125608..126042 (-) 435 Protein_121 sigma-54 factor interaction domain-containing protein -
  G4G31_RS24780 pilR 126060..126473 (-) 414 WP_229425250.1 response regulator Regulator
  G4G31_RS24785 - 126661..127188 (-) 528 Protein_123 ATP-binding protein -
  G4G31_RS24790 - 127378..128268 (-) 891 WP_229425251.1 PAS domain-containing protein -
  G4G31_RS00590 (G4G31_00590) - 128272..128523 (-) 252 WP_182989854.1 PP0621 family protein -
  G4G31_RS00595 (G4G31_00595) - 128520..129329 (-) 810 Protein_126 inner membrane protein YpjD -
  G4G31_RS00600 (G4G31_00600) - 129396..130199 (-) 804 WP_182989855.1 ABC transporter ATP-binding protein -
  G4G31_RS00605 (G4G31_00605) - 130201..131025 (-) 825 WP_182989856.1 ABC transporter permease -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14626.04 Da        Isoelectric Point: 5.2461

>NTDB_id=432842 G4G31_RS24780 WP_229425250.1 126060..126473(-) (pilR) [Massilia sp. Se16.2.3]
MSSPRILVVDDEADLRDLLEITLVKMGLDVDCAATLREARRLVADNAYALVLTDMRLPDGLGLELVREVSGSSKTPIAVI
TAFGSADNAVVALKAGAFDYVSKPVVLDELRVMVRSALKLSEAPAVARPGRAPRPRA

Nucleotide


Download         Length: 414 bp        

>NTDB_id=432842 G4G31_RS24780 WP_229425250.1 126060..126473(-) (pilR) [Massilia sp. Se16.2.3]
ATGAGTTCACCCCGCATCCTCGTCGTCGACGACGAAGCCGACCTGCGCGACCTGCTCGAGATCACCCTCGTGAAAATGGG
CCTCGATGTCGATTGCGCGGCGACGCTGCGCGAAGCGCGCCGGCTGGTGGCCGACAATGCCTATGCGCTGGTGCTGACCG
ACATGCGCCTGCCCGATGGCCTGGGCCTGGAACTGGTGCGCGAGGTGTCAGGCAGCTCGAAGACGCCGATCGCCGTCATC
ACCGCCTTTGGCAGTGCCGACAACGCGGTGGTGGCGTTAAAAGCTGGCGCATTCGATTATGTCTCGAAACCGGTGGTGCT
CGACGAGCTGCGCGTGATGGTGCGCTCGGCCCTGAAGCTGTCGGAAGCGCCGGCGGTGGCCCGGCCGGGGAGGGCGCCGC
GCCCTCGCGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

52.308

94.891

0.496
  pilR Acinetobacter baumannii strain A118

48.276

84.672

0.409