Detailed information NTG0432835

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: G4G31_RS09105
• Genome accession: NZ_CP050451
• Coordinates: 1959772..1960638 (-)
• Length: 288 a.a.
• NCBI ID: WP_182991153.1
• Uniprot ID: -
• Organism: Massilia sp. Se16.2.3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1954772..1965638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G4G31_RS09075 (G4G31_09080)	-	1955672..1956082 (+)	411	WP_182991147.1	NUDIX domain-containing protein	-
G4G31_RS09080 (G4G31_09085)	-	1956115..1957416 (+)	1302	WP_182991148.1	D-amino acid dehydrogenase	-
G4G31_RS09085 (G4G31_09090)	yidD	1957596..1958078 (-)	483	WP_182991149.1	membrane protein insertion efficiency factor YidD	-
G4G31_RS09090 (G4G31_09095)	yacG	1958081..1958269 (-)	189	WP_182991150.1	DNA gyrase inhibitor YacG	-
G4G31_RS09095 (G4G31_09100)	zapD	1958300..1959055 (-)	756	WP_182991151.1	cell division protein ZapD	-
G4G31_RS09100 (G4G31_09105)	coaE	1959120..1959770 (-)	651	WP_182991152.1	dephospho-CoA kinase	-
G4G31_RS09105 (G4G31_09110)	pilD	1959772..1960638 (-)	867	WP_182991153.1	A24 family peptidase	Machinery gene
G4G31_RS09110 (G4G31_09115)	-	1960970..1961644 (+)	675	WP_182991154.1	hypothetical protein	-
G4G31_RS09115 (G4G31_09120)	-	1961637..1962464 (+)	828	WP_182991155.1	RES family NAD+ phosphorylase	-
G4G31_RS09120 (G4G31_09125)	-	1962571..1963749 (+)	1179	WP_182991156.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-
G4G31_RS09125 (G4G31_09130)	-	1964284..1965186 (+)	903	WP_182991157.1	phospholipase D family protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31209.97 Da
• Isoelectric Point: 8.1257

>NTDB_id=432835 G4G31_RS09105 WP_182991153.1 1959772..1960638(-) (pilD) [Massilia sp. Se16.2.3]
METLLFADPASFGPTLVAGLFGLLIGSFLNVVIHRVPKMMQRESDNYVAHESGKELPHTDRYNLMVPRSACPHCGHQISA
LENIPVVSWLALRGKCRNCKAPISPRYPAVELLTGILSALLVWTFGSGIAGLATLLFLYLLIAMTFIDFDTQLLPDDLTY
PLLWAGLLVNLNGTFVPLRDAVIGAAAGYLVLWSVYWIFKLVRGKEGMGYGDFKLLAALGAWLGWQMLPAIILLSSVVGA
VVGISLIVFARRGRDNPIPFGPYLAAAGLIALLYGPQLTAGLQQFLAA

Nucleotide

• Length: 867 bp

>NTDB_id=432835 G4G31_RS09105 WP_182991153.1 1959772..1960638(-) (pilD) [Massilia sp. Se16.2.3]
TTGGAAACTCTTCTCTTCGCCGACCCGGCATCGTTTGGCCCTACCCTGGTGGCCGGCCTGTTCGGCCTCCTGATCGGCAG
CTTCCTGAACGTGGTGATCCACCGCGTGCCGAAGATGATGCAGCGCGAATCGGACAATTATGTCGCCCACGAGAGCGGCA
AGGAATTGCCGCACACGGACCGCTACAACCTGATGGTGCCACGCTCGGCCTGCCCGCACTGCGGCCACCAGATCAGCGCG
CTCGAGAACATTCCCGTGGTCAGCTGGCTGGCGCTGCGCGGCAAATGCCGCAACTGCAAGGCGCCGATCTCGCCGCGCTA
CCCGGCCGTCGAACTGCTGACCGGGATACTGTCGGCCCTGCTGGTCTGGACCTTCGGCAGCGGCATCGCCGGCCTGGCGA
CGCTGCTGTTCCTCTACCTGCTCATTGCGATGACCTTCATCGACTTCGACACCCAGCTGCTGCCCGACGACCTCACCTAC
CCGCTGCTGTGGGCGGGCCTGCTGGTCAACCTGAACGGGACCTTCGTGCCGCTGCGCGACGCCGTCATTGGCGCGGCCGC
CGGCTACCTGGTGCTGTGGAGCGTGTACTGGATCTTCAAGCTGGTGCGCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGCTGGCCGCGCTCGGCGCCTGGCTCGGCTGGCAGATGCTGCCGGCCATCATCCTGCTGTCCTCGGTGGTGGGCGCT
GTCGTCGGCATCAGCCTGATCGTGTTCGCTCGCCGCGGCCGCGACAATCCGATCCCGTTCGGGCCCTACCTGGCAGCCGC
CGGCCTGATCGCCCTGCTCTACGGGCCGCAACTGACGGCCGGCCTGCAGCAGTTCCTGGCGGCCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.143	92.361	0.528
pilD	Vibrio campbellii strain DS40M4	55.682	91.667	0.51
pilD	Acinetobacter baumannii D1279779	50.943	92.014	0.469
pilD	Acinetobacter nosocomialis M2	49.811	92.014	0.458
pilD	Neisseria gonorrhoeae MS11	50	89.583	0.448