Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   HCG51_RS05000 Genome accession   NZ_CP050440
Coordinates   1264550..1266565 (+) Length   671 a.a.
NCBI ID   WP_167719432.1    Uniprot ID   A0A6G9SBY1
Organism   Tolypothrix sp. PCC 7910     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1259550..1271565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCG51_RS04990 (HCG51_04985) dnaK 1261102..1263060 (-) 1959 WP_167719426.1 molecular chaperone DnaK -
  HCG51_RS04995 (HCG51_04990) grpE 1263391..1264137 (-) 747 WP_167719429.1 nucleotide exchange factor GrpE -
  HCG51_RS05000 (HCG51_04995) pilB/pilB1 1264550..1266565 (+) 2016 WP_167719432.1 GspE/PulE family protein Machinery gene
  HCG51_RS05005 (HCG51_05000) pilT 1266618..1267745 (+) 1128 WP_167719435.1 type IV pilus twitching motility protein PilT Machinery gene
  HCG51_RS05010 (HCG51_05005) - 1267849..1269069 (+) 1221 WP_167719438.1 type II secretion system F family protein -
  HCG51_RS05015 (HCG51_05010) - 1269173..1269730 (+) 558 WP_167719442.1 hypothetical protein -
  HCG51_RS05020 (HCG51_05015) - 1269868..1270890 (-) 1023 WP_167719445.1 saccharopine dehydrogenase-like oxidoreductase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75162.04 Da        Isoelectric Point: 5.1723

>NTDB_id=432703 HCG51_RS05000 WP_167719432.1 1264550..1266565(+) (pilB/pilB1) [Tolypothrix sp. PCC 7910]
MTYSSPQRRSTALTTKTEFSPFGNKLVQTGYVNSEQMRQALIDSRKSGIPLTEMLESITGRQLSPELVRQYKKQQLFELK
ILYGVEFLDPEVNQLANTMVGRLIETLIPVDICRRHRLIPLSKHDDQTPPCVLVAMVDPDNLEASDDLNRILRPQGLALQ
RMVITQEDYQQLINQYLDELAIRQKHLEQEKFTDINQDLENLNNLDIEDAPDDMEADLGAAMKGAEDAPVINLVNRILAK
ALHEKVSDIHIEPQEENLRIRFRKDGVLRQAFDPLPKKIVAAVTARFKIISSLDIAERRLPQDGRIRRMFEGRKVDFRVN
TLPSRYGEKICLRILDNSSTQLGLHKLITDQETLDIVKDMVSRPFGLILVTGPTGSGKTTSLYSALAEKNDPGVNISTVE
DPIEYSLPGITQVQVIREKGLDFATALRAFLRQDPDVLLVGETRDKETAKTAIEAALTGHLVLTTLHTNDAPGAIARLGE
MGIEPFMVSSSLIGVLAQRLVRRVCPDCRIPYTPTTEELARYGMSASQEVNVTFYKANSLPNEAQAEAKAKGQQVCSTCN
GVGYKGRCGVYEVMRITENLQTLINEEAPTERIKEVAVEEGMKTLLAYSLDLVRQGSTTLEEVERVTFTDTGLEAELKAK
RKSGLTCRTCDATLQPEWLDCPYCMTPRFSD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=432703 HCG51_RS05000 WP_167719432.1 1264550..1266565(+) (pilB/pilB1) [Tolypothrix sp. PCC 7910]
ATGACTTACTCGTCACCGCAACGGCGCAGTACCGCTCTAACTACAAAAACAGAGTTTTCGCCCTTTGGCAACAAGCTAGT
ACAGACTGGCTATGTGAATAGCGAACAGATGAGACAGGCGCTAATTGACAGCCGCAAGTCTGGTATCCCCCTAACGGAGA
TGCTAGAGTCAATCACTGGCCGGCAATTATCACCTGAGTTAGTTAGACAATACAAGAAACAACAGTTATTTGAATTAAAA
ATACTATACGGGGTTGAATTCCTCGATCCGGAGGTCAACCAACTTGCTAATACGATGGTGGGGAGGTTAATTGAAACCCT
CATTCCCGTAGACATTTGTCGTCGCCATCGCTTAATACCCCTATCAAAACATGACGACCAAACCCCACCTTGTGTTTTAG
TGGCAATGGTCGATCCGGATAATTTAGAAGCTTCCGATGATCTCAACCGCATCTTGCGCCCACAAGGCTTAGCTTTGCAG
CGCATGGTAATTACCCAGGAAGACTATCAACAGCTGATCAATCAATACCTAGATGAACTAGCTATTAGGCAAAAACATCT
AGAACAAGAAAAGTTTACAGATATCAATCAAGATTTAGAAAACCTGAATAATCTTGATATAGAAGATGCTCCTGATGATA
TGGAGGCTGATTTAGGAGCAGCGATGAAAGGTGCAGAAGATGCACCAGTCATCAATCTTGTCAATAGAATTCTGGCTAAA
GCCTTGCATGAAAAGGTTTCGGATATTCACATTGAACCGCAGGAAGAAAATCTCCGCATTCGCTTTCGTAAGGATGGGGT
GCTGCGTCAAGCGTTTGACCCCCTGCCGAAAAAAATCGTGGCGGCGGTAACAGCCAGGTTTAAAATCATTTCTAGCCTAG
ACATTGCGGAGAGACGTTTACCCCAAGACGGACGTATCCGGCGGATGTTTGAGGGACGTAAAGTCGATTTCCGCGTCAAC
ACCTTACCCAGTCGCTACGGGGAAAAGATTTGTCTGCGGATTTTGGATAATTCCTCAACTCAACTCGGATTACATAAGCT
GATTACTGACCAAGAAACCTTAGATATTGTTAAGGACATGGTCAGCCGTCCCTTTGGTTTGATTTTGGTTACAGGCCCTA
CTGGTTCTGGTAAAACGACATCGTTATATTCGGCGTTGGCAGAAAAGAACGATCCTGGAGTCAACATCAGTACAGTAGAA
GACCCAATTGAGTACAGTTTGCCAGGGATTACTCAAGTACAAGTAATTCGGGAAAAAGGGCTAGATTTTGCTACCGCTTT
GCGGGCTTTTTTGCGGCAAGATCCAGATGTGTTACTCGTGGGTGAAACCAGAGACAAAGAAACTGCAAAAACTGCAATTG
AGGCAGCCTTAACAGGTCACTTAGTATTAACCACCTTACACACCAATGATGCCCCAGGTGCGATCGCTCGTTTGGGAGAA
ATGGGCATTGAACCTTTCATGGTTTCTAGTTCTTTGATTGGTGTATTAGCACAACGTTTGGTTAGGCGTGTTTGTCCTGA
TTGTCGTATTCCCTATACTCCTACAACCGAAGAACTGGCTCGTTATGGTATGTCTGCTTCTCAAGAAGTCAATGTCACTT
TCTACAAAGCTAATTCCTTGCCTAACGAAGCCCAGGCCGAAGCTAAAGCCAAAGGTCAACAAGTATGTTCCACCTGTAAT
GGCGTTGGATATAAAGGGCGTTGTGGTGTTTATGAAGTTATGCGAATCACCGAAAACTTACAAACTCTGATCAACGAAGA
AGCACCAACGGAACGAATTAAGGAAGTCGCAGTAGAAGAAGGGATGAAAACCTTGCTGGCTTACAGCCTAGATTTAGTTC
GCCAAGGCTCAACCACCCTAGAAGAAGTCGAGCGAGTCACGTTTACTGATACCGGTTTGGAAGCTGAGCTAAAAGCTAAA
CGCAAGAGTGGGCTGACGTGCCGCACTTGTGATGCCACTTTACAACCGGAATGGTTAGATTGTCCCTACTGTATGACACC
TCGCTTTTCTGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(236-503)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(72-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9SBY1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

65.134

100

0.654