Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SSUST1_RS10080 Genome accession   NC_017950
Coordinates   2020483..2021577 (+) Length   364 a.a.
NCBI ID   WP_014736601.1    Uniprot ID   -
Organism   Streptococcus suis ST1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2015483..2026577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUST1_RS10055 (SSUST1_2066) pgsA 2016002..2016541 (-) 540 WP_014736596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SSUST1_RS10060 (SSUST1_2067) rodZ 2016551..2017408 (-) 858 WP_014736597.1 cytoskeleton protein RodZ -
  SSUST1_RS10065 (SSUST1_2068) yfmH 2017490..2018773 (-) 1284 WP_014736598.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SSUST1_RS10070 (SSUST1_2069) yfmF 2018770..2020023 (-) 1254 WP_014736599.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  SSUST1_RS10075 (SSUST1_2070) yaaA 2020097..2020480 (+) 384 WP_014736600.1 S4 domain-containing protein YaaA -
  SSUST1_RS10080 (SSUST1_2071) recF 2020483..2021577 (+) 1095 WP_014736601.1 DNA replication/repair protein RecF Machinery gene
  SSUST1_RS10085 (SSUST1_2072) guaB 2021649..2023130 (-) 1482 WP_014637236.1 IMP dehydrogenase -
  SSUST1_RS10090 (SSUST1_2073) trpS 2023353..2024378 (-) 1026 WP_014736602.1 tryptophan--tRNA ligase -
  SSUST1_RS10095 (SSUST1_2075) - 2024733..2025605 (+) 873 WP_014736603.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42188.34 Da        Isoelectric Point: 7.4359

>NTDB_id=43265 SSUST1_RS10080 WP_014736601.1 2020483..2021577(+) (recF) [Streptococcus suis ST1]
MWLERLELQHFRNYNQLDIQFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLEKLEEFGNRKVKEISGNREELTIEYKTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHQDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLNHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=43265 SSUST1_RS10080 WP_014736601.1 2020483..2021577(+) (recF) [Streptococcus suis ST1]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTCAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTATTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTAGGGCAAATCAAACCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAGAGAAATTAGAGGAATTTGGAAATAGAAAAGTTAAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACAAAACCTCAATTAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACA
GAATTGGAAAGGTGTCGCAAACGTGACTTATTTAAGAAAAATACAGGAGTTGGACCACATCAAGATGATGTAGCCTTCTT
CATAAATGGAATGAATGCCCATTATGGTAGTCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAAACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

68.975

99.176

0.684
  recF Bacillus subtilis subsp. subtilis str. 168

43.243

100

0.44