Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HB368_RS01700 Genome accession   NZ_CP050425
Coordinates   357528..358346 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain PM194188     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352528..363346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB368_RS01665 (HB368_01665) - 353110..353240 (-) 131 Protein_315 hypothetical protein -
  HB368_RS01670 (HB368_01670) rpoZ 353279..353557 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HB368_RS01675 (HB368_01675) gmk 353630..354259 (-) 630 WP_000015936.1 guanylate kinase -
  HB368_RS01680 (HB368_01680) ispH 354382..355332 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HB368_RS01685 (HB368_01685) fimU 355502..355975 (+) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HB368_RS01690 (HB368_01690) pilV 355969..356529 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HB368_RS01695 (HB368_01695) pilW 356530..357531 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  HB368_RS01700 (HB368_01700) pilX 357528..358346 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HB368_RS01705 (HB368_01705) pilY1 358358..362212 (+) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene
  HB368_RS01710 (HB368_01710) pilY2 362225..362707 (+) 483 WP_001046421.1 type IV pilin protein Machinery gene
  HB368_RS01715 (HB368_01715) pilE 362704..363129 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=432611 HB368_RS01700 WP_000149374.1 357528..358346(+) (pilX) [Acinetobacter baumannii strain PM194188]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=432611 HB368_RS01700 WP_000149374.1 357528..358346(+) (pilX) [Acinetobacter baumannii strain PM194188]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCTTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993