Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HB368_RS01685 Genome accession   NZ_CP050425
Coordinates   355502..355975 (+) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PM194188     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350502..360975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB368_RS01660 (HB368_01660) - 350965..353070 (-) 2106 WP_001117591.1 RelA/SpoT family protein -
  HB368_RS01665 (HB368_01665) - 353110..353240 (-) 131 Protein_315 hypothetical protein -
  HB368_RS01670 (HB368_01670) rpoZ 353279..353557 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HB368_RS01675 (HB368_01675) gmk 353630..354259 (-) 630 WP_000015936.1 guanylate kinase -
  HB368_RS01680 (HB368_01680) ispH 354382..355332 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HB368_RS01685 (HB368_01685) fimU 355502..355975 (+) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HB368_RS01690 (HB368_01690) pilV 355969..356529 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HB368_RS01695 (HB368_01695) pilW 356530..357531 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  HB368_RS01700 (HB368_01700) pilX 357528..358346 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=432608 HB368_RS01685 WP_001214068.1 355502..355975(+) (fimU) [Acinetobacter baumannii strain PM194188]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=432608 HB368_RS01685 WP_001214068.1 355502..355975(+) (fimU) [Acinetobacter baumannii strain PM194188]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994