Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BVELS4_RS17345 Genome accession   NZ_CP050424
Coordinates   3508313..3509002 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain S4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3503313..3514002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVELS4_RS17310 (BVELS4_03468) - 3503510..3503992 (-) 483 WP_167340892.1 flagellar protein FlgN -
  BVELS4_RS17315 (BVELS4_03469) flgM 3504007..3504273 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BVELS4_RS17320 (BVELS4_03470) - 3504343..3504762 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  BVELS4_RS17325 comFC 3504836..3505525 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  BVELS4_RS17330 (BVELS4_03472) - 3505531..3505815 (-) 285 WP_007407481.1 competence protein ComFB -
  BVELS4_RS17335 (BVELS4_03473) comFA 3505873..3507258 (-) 1386 WP_167340893.1 DEAD/DEAH box helicase Machinery gene
  BVELS4_RS17340 (BVELS4_03474) - 3507367..3508215 (-) 849 WP_044801920.1 DegV family protein -
  BVELS4_RS17345 (BVELS4_03475) degU 3508313..3509002 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BVELS4_RS17350 (BVELS4_03476) degS 3509079..3510242 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BVELS4_RS17355 (BVELS4_03477) - 3510465..3511112 (+) 648 WP_007614107.1 YigZ family protein -
  BVELS4_RS17360 (BVELS4_03478) - 3511117..3512337 (+) 1221 WP_105937243.1 LCP family protein -
  BVELS4_RS17365 (BVELS4_03479) - 3512436..3513512 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=432590 BVELS4_RS17345 WP_003219701.1 3508313..3509002(-) (degU) [Bacillus velezensis strain S4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=432590 BVELS4_RS17345 WP_003219701.1 3508313..3509002(-) (degU) [Bacillus velezensis strain S4]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCTGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1