Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | HBN41_RS08305 | Genome accession | NZ_CP050421 |
| Coordinates | 1752761..1753141 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain VB2200 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1747761..1758141
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HBN41_RS08275 (HBN41_08275) | kdsB | 1748664..1749425 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| HBN41_RS08280 (HBN41_08280) | - | 1749437..1750417 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| HBN41_RS08285 (HBN41_08285) | - | 1750429..1750770 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| HBN41_RS08290 (HBN41_08290) | - | 1750788..1751561 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| HBN41_RS08295 (HBN41_08295) | - | 1751599..1752207 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| HBN41_RS08300 (HBN41_08300) | - | 1752217..1752771 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| HBN41_RS08305 (HBN41_08305) | xcpV | 1752761..1753141 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| HBN41_RS08310 (HBN41_08310) | xcpW | 1753141..1753842 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| HBN41_RS08315 (HBN41_08315) | gspK | 1753842..1754801 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| HBN41_RS08320 (HBN41_08320) | - | 1755032..1755628 (+) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| HBN41_RS08325 (HBN41_08325) | ung | 1755679..1756392 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| HBN41_RS08330 (HBN41_08330) | - | 1756389..1757513 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| HBN41_RS08335 (HBN41_08335) | tadA | 1757520..1758023 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=432499 HBN41_RS08305 WP_000836911.1 1752761..1753141(+) (xcpV) [Acinetobacter baumannii strain VB2200]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=432499 HBN41_RS08305 WP_000836911.1 1752761..1753141(+) (xcpV) [Acinetobacter baumannii strain VB2200]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |