Detailed information NTG0432500

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: HBN41_RS08310
• Genome accession: NZ_CP050421
• Coordinates: 1753141..1753842 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain VB2200
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1748141..1758842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBN41_RS08275 (HBN41_08275)	kdsB	1748664..1749425 (+)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HBN41_RS08280 (HBN41_08280)	-	1749437..1750417 (+)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
HBN41_RS08285 (HBN41_08285)	-	1750429..1750770 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
HBN41_RS08290 (HBN41_08290)	-	1750788..1751561 (+)	774	WP_000497298.1	TatD family hydrolase	-
HBN41_RS08295 (HBN41_08295)	-	1751599..1752207 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
HBN41_RS08300 (HBN41_08300)	-	1752217..1752771 (+)	555	WP_000841373.1	type II secretion system protein	-
HBN41_RS08305 (HBN41_08305)	xcpV	1752761..1753141 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
HBN41_RS08310 (HBN41_08310)	xcpW	1753141..1753842 (+)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
HBN41_RS08315 (HBN41_08315)	gspK	1753842..1754801 (+)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
HBN41_RS08320 (HBN41_08320)	-	1755032..1755628 (+)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
HBN41_RS08325 (HBN41_08325)	ung	1755679..1756392 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
HBN41_RS08330 (HBN41_08330)	-	1756389..1757513 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
HBN41_RS08335 (HBN41_08335)	tadA	1757520..1758023 (+)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
HBN41_RS08340 (HBN41_08340)	-	1758093..1758536 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=432500 HBN41_RS08310 WP_000594589.1 1753141..1753842(+) (xcpW) [Acinetobacter baumannii strain VB2200]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=432500 HBN41_RS08310 WP_000594589.1 1753141..1753842(+) (xcpW) [Acinetobacter baumannii strain VB2200]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996