Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   HBM80_RS08015 Genome accession   NZ_CP050400
Coordinates   1540284..1540664 (+) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain VB11737     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1535284..1545664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBM80_RS07985 (HBM80_07985) kdsB 1536187..1536948 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HBM80_RS07990 (HBM80_07990) - 1536960..1537940 (+) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  HBM80_RS07995 (HBM80_07995) - 1537952..1538293 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  HBM80_RS08000 (HBM80_08000) - 1538311..1539084 (+) 774 WP_000497298.1 TatD family hydrolase -
  HBM80_RS08005 (HBM80_08005) - 1539122..1539730 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  HBM80_RS08010 (HBM80_08010) - 1539740..1540294 (+) 555 WP_000841373.1 type II secretion system protein -
  HBM80_RS08015 (HBM80_08015) xcpV 1540284..1540664 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  HBM80_RS08020 (HBM80_08020) xcpW 1540664..1541365 (+) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  HBM80_RS08025 (HBM80_08025) gspK 1541365..1542324 (+) 960 WP_000301476.1 type II secretion system minor pseudopilin GspK -
  HBM80_RS08030 (HBM80_08030) - 1542555..1543151 (+) 597 WP_000908452.1 6-pyruvoyl trahydropterin synthase family protein -
  HBM80_RS08035 (HBM80_08035) ung 1543202..1543915 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  HBM80_RS08040 (HBM80_08040) - 1543912..1545036 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  HBM80_RS08045 (HBM80_08045) tadA 1545043..1545546 (+) 504 WP_000033178.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=432216 HBM80_RS08015 WP_000836911.1 1540284..1540664(+) (xcpV) [Acinetobacter baumannii strain VB11737]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=432216 HBM80_RS08015 WP_000836911.1 1540284..1540664(+) (xcpV) [Acinetobacter baumannii strain VB11737]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1