Detailed information NTG0432217

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: HBM80_RS08020
• Genome accession: NZ_CP050400
• Coordinates: 1540664..1541365 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain VB11737
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1535664..1546365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBM80_RS07985 (HBM80_07985)	kdsB	1536187..1536948 (+)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HBM80_RS07990 (HBM80_07990)	-	1536960..1537940 (+)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
HBM80_RS07995 (HBM80_07995)	-	1537952..1538293 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
HBM80_RS08000 (HBM80_08000)	-	1538311..1539084 (+)	774	WP_000497298.1	TatD family hydrolase	-
HBM80_RS08005 (HBM80_08005)	-	1539122..1539730 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
HBM80_RS08010 (HBM80_08010)	-	1539740..1540294 (+)	555	WP_000841373.1	type II secretion system protein	-
HBM80_RS08015 (HBM80_08015)	xcpV	1540284..1540664 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
HBM80_RS08020 (HBM80_08020)	xcpW	1540664..1541365 (+)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
HBM80_RS08025 (HBM80_08025)	gspK	1541365..1542324 (+)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
HBM80_RS08030 (HBM80_08030)	-	1542555..1543151 (+)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
HBM80_RS08035 (HBM80_08035)	ung	1543202..1543915 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
HBM80_RS08040 (HBM80_08040)	-	1543912..1545036 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
HBM80_RS08045 (HBM80_08045)	tadA	1545043..1545546 (+)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
HBM80_RS08050 (HBM80_08050)	-	1545616..1546059 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=432217 HBM80_RS08020 WP_000594589.1 1540664..1541365(+) (xcpW) [Acinetobacter baumannii strain VB11737]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=432217 HBM80_RS08020 WP_000594589.1 1540664..1541365(+) (xcpW) [Acinetobacter baumannii strain VB11737]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996