Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HBK89_RS17070 Genome accession   NZ_CP050388
Coordinates   3587952..3588770 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain VB473     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3582952..3593770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBK89_RS17055 (HBK89_17055) pilE 3583169..3583594 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  HBK89_RS17060 (HBK89_17060) pilY2 3583591..3584073 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  HBK89_RS17065 (HBK89_17065) pilY1 3584086..3587940 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  HBK89_RS17070 (HBK89_17070) pilX 3587952..3588770 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HBK89_RS17075 (HBK89_17075) pilW 3588767..3589768 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  HBK89_RS17080 (HBK89_17080) pilV 3589769..3590329 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  HBK89_RS17085 (HBK89_17085) fimU 3590323..3590796 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HBK89_RS17090 (HBK89_17090) ispH 3590966..3591916 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HBK89_RS17095 (HBK89_17095) gmk 3592039..3592668 (+) 630 WP_000015937.1 guanylate kinase -
  HBK89_RS17100 (HBK89_17100) rpoZ 3592741..3593019 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HBK89_RS17105 (HBK89_17105) - 3593058..3593187 (+) 130 Protein_3336 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=432139 HBK89_RS17070 WP_000149374.1 3587952..3588770(-) (pilX) [Acinetobacter baumannii strain VB473]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=432139 HBK89_RS17070 WP_000149374.1 3587952..3588770(-) (pilX) [Acinetobacter baumannii strain VB473]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993