Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   HBK89_RS17055 Genome accession   NZ_CP050388
Coordinates   3583169..3583594 (-) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain VB473     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3578169..3588594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBK89_RS17025 (HBK89_17025) - 3578697..3579731 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  HBK89_RS17030 (HBK89_17030) - 3579846..3580787 (+) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  HBK89_RS17035 (HBK89_17035) rplS 3580840..3581208 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  HBK89_RS17040 (HBK89_17040) trmD 3581417..3582157 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HBK89_RS17045 (HBK89_17045) rimM 3582203..3582751 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  HBK89_RS17050 (HBK89_17050) rpsP 3582771..3583022 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  HBK89_RS17055 (HBK89_17055) pilE 3583169..3583594 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  HBK89_RS17060 (HBK89_17060) pilY2 3583591..3584073 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  HBK89_RS17065 (HBK89_17065) pilY1 3584086..3587940 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=432136 HBK89_RS17055 WP_000788342.1 3583169..3583594(-) (pilE) [Acinetobacter baumannii strain VB473]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=432136 HBK89_RS17055 WP_000788342.1 3583169..3583594(-) (pilE) [Acinetobacter baumannii strain VB473]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518