Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HBK86_RS16000 Genome accession   NZ_CP050385
Coordinates   3279260..3279895 (+) Length   211 a.a.
NCBI ID   WP_000472261.1    Uniprot ID   A0AAQ0VFS4
Organism   Acinetobacter baumannii strain VB82     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3274260..3284895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBK86_RS15985 (HBK86_15985) adeT2 3275320..3276306 (-) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  HBK86_RS15990 (HBK86_15990) - 3276386..3277201 (-) 816 WP_000547780.1 NAD-dependent epimerase/dehydratase family protein -
  HBK86_RS15995 (HBK86_15995) recG 3277222..3279267 (+) 2046 WP_000204958.1 ATP-dependent DNA helicase RecG -
  HBK86_RS16000 (HBK86_16000) comF 3279260..3279895 (+) 636 WP_000472261.1 ComF family protein Machinery gene
  HBK86_RS16005 (HBK86_16005) - 3279898..3280299 (-) 402 WP_000849701.1 NUDIX hydrolase -
  HBK86_RS16010 (HBK86_16010) - 3280314..3280895 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  HBK86_RS16015 (HBK86_16015) - 3281053..3282066 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  HBK86_RS16020 (HBK86_16020) - 3282136..3282423 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  HBK86_RS16025 (HBK86_16025) - 3282435..3283076 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  HBK86_RS16030 (HBK86_16030) - 3283103..3283783 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  HBK86_RS16035 (HBK86_16035) mlaE 3283783..3284559 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24574.70 Da        Isoelectric Point: 9.7140

>NTDB_id=432076 HBK86_RS16000 WP_000472261.1 3279260..3279895(+) (comF) [Acinetobacter baumannii strain VB82]
MFKFLNPHYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=432076 HBK86_RS16000 WP_000472261.1 3279260..3279895(+) (comF) [Acinetobacter baumannii strain VB82]
ATGTTTAAGTTTTTAAACCCACATTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986