Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SSUST1_RS02190 Genome accession   NC_017950
Coordinates   426739..427380 (+) Length   213 a.a.
NCBI ID   WP_014735510.1    Uniprot ID   -
Organism   Streptococcus suis ST1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 421739..432380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUST1_RS02170 (SSUST1_0427) - 422039..422776 (+) 738 WP_014735507.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  SSUST1_RS02175 (SSUST1_0428) pknB 422776..424305 (+) 1530 Protein_387 Stk1 family PASTA domain-containing Ser/Thr kinase -
  SSUST1_RS11525 - 424282..424770 (+) 489 WP_412103215.1 PASTA domain-containing protein -
  SSUST1_RS02180 (SSUST1_0429) liaF 425059..425754 (+) 696 WP_012774984.1 cell wall-active antibiotics response protein LiaF -
  SSUST1_RS02185 (SSUST1_0430) - 425751..426767 (+) 1017 WP_014735509.1 sensor histidine kinase -
  SSUST1_RS02190 (SSUST1_0431) vraR 426739..427380 (+) 642 WP_014735510.1 response regulator transcription factor Regulator
  SSUST1_RS02195 (SSUST1_0432) - 427430..428830 (+) 1401 WP_014735511.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  SSUST1_RS02200 (SSUST1_0433) - 428832..429203 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  SSUST1_RS02205 (SSUST1_0434) cysK 429229..430155 (-) 927 WP_012774985.1 cysteine synthase A -
  SSUST1_RS02210 (SSUST1_0435) - 430246..430878 (-) 633 WP_014735512.1 YigZ family protein -
  SSUST1_RS02215 (SSUST1_0436) comFA/cflA 430935..432227 (+) 1293 WP_014735513.1 DEAD/DEAH box helicase Machinery gene

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23832.44 Da        Isoelectric Point: 4.8970

>NTDB_id=43207 SSUST1_RS02190 WP_014735510.1 426739..427380(+) (vraR) [Streptococcus suis ST1]
MNTIRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAKALEVKPDVIVMDLVMPKMTGVEATLALLKEWPQAQI
VILTSYLDNEKIYPVLEAGARGYMLKTSSADEILVAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLA
KGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLVAQEDQ

Nucleotide


Download         Length: 642 bp        

>NTDB_id=43207 SSUST1_RS02190 WP_014735510.1 426739..427380(+) (vraR) [Streptococcus suis ST1]
ATGAATACGATTCGAGTGATGCTGGTTGACGACCATGAGATGGTTCGTCTAGGATTGAAAAGTTACTTAAATTTACAGCC
AGATGTTGAAGTAGTTGCAGAAGCTAGTGATGGCGAGGAAGGTTTGGCTAAAGCATTAGAGGTTAAACCCGATGTTATAG
TGATGGACTTGGTTATGCCCAAGATGACTGGCGTAGAAGCAACCCTGGCCTTGCTGAAGGAATGGCCGCAAGCGCAGATT
GTCATCCTGACCTCCTATCTAGATAATGAGAAAATCTATCCTGTGCTGGAAGCAGGAGCTCGTGGCTATATGTTGAAAAC
GTCAAGTGCTGACGAAATCTTAGTAGCCATCCGCAAGGTAGCTCTTGGAGAATATGCTATTGAGACAGAAGTAGAGAAAA
AAGTAGAGCACCATAAACGCCACCCAGATTTACATGATGACTTGACAGCTCGTGAACGCGAAATCTTGACGCTGTTAGCC
AAGGGATATGATAATCAACGAATTGCAGATGAGTCCTTCATTTCCCTAAAAACTGTTAAGACCCATGTTTCCAATATCTT
ATCCAAACTAGCTGTTAGCGATCGTACTCAAGCAGTTGTTTATGCTTTCCAGCATGGTTTGGTGGCGCAAGAGGACCAAT
AG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-202)

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

55.072

97.183

0.535
  degU Bacillus subtilis subsp. subtilis str. 168

38.496

100

0.408

Multiple sequence alignment