Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | HBK86_RS06510 | Genome accession | NZ_CP050385 |
| Coordinates | 1343268..1343648 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836910.1 | Uniprot ID | A0AAQ1AB09 |
| Organism | Acinetobacter baumannii strain VB82 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1338268..1348648
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HBK86_RS06480 (HBK86_06480) | kdsB | 1339171..1339932 (+) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| HBK86_RS06485 (HBK86_06485) | - | 1339944..1340924 (+) | 981 | WP_001075418.1 | DNA polymerase III subunit delta' | - |
| HBK86_RS06490 (HBK86_06490) | - | 1340936..1341277 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| HBK86_RS06495 (HBK86_06495) | - | 1341295..1342068 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| HBK86_RS06500 (HBK86_06500) | - | 1342106..1342714 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| HBK86_RS06505 (HBK86_06505) | - | 1342724..1343278 (+) | 555 | WP_000841379.1 | type II secretion system protein | - |
| HBK86_RS06510 (HBK86_06510) | xcpV | 1343268..1343648 (+) | 381 | WP_000836910.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| HBK86_RS06515 (HBK86_06515) | xcpW | 1343648..1344349 (+) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| HBK86_RS06520 (HBK86_06520) | gspK | 1344349..1345308 (+) | 960 | WP_000301481.1 | type II secretion system minor pseudopilin GspK | - |
| HBK86_RS06525 (HBK86_06525) | - | 1345538..1346134 (+) | 597 | WP_000908451.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| HBK86_RS06530 (HBK86_06530) | ung | 1346185..1346898 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| HBK86_RS06535 (HBK86_06535) | - | 1346895..1348019 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| HBK86_RS06540 (HBK86_06540) | tadA | 1348026..1348529 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13957.17 Da Isoelectric Point: 9.8004
>NTDB_id=432067 HBK86_RS06510 WP_000836910.1 1343268..1343648(+) (xcpV) [Acinetobacter baumannii strain VB82]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=432067 HBK86_RS06510 WP_000836910.1 1343268..1343648(+) (xcpV) [Acinetobacter baumannii strain VB82]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |