Detailed information NTG0432068

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: HBK86_RS06515
• Genome accession: NZ_CP050385
• Coordinates: 1343648..1344349 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain VB82
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1338648..1349349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBK86_RS06480 (HBK86_06480)	kdsB	1339171..1339932 (+)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
HBK86_RS06485 (HBK86_06485)	-	1339944..1340924 (+)	981	WP_001075418.1	DNA polymerase III subunit delta'	-
HBK86_RS06490 (HBK86_06490)	-	1340936..1341277 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
HBK86_RS06495 (HBK86_06495)	-	1341295..1342068 (+)	774	WP_000497298.1	TatD family hydrolase	-
HBK86_RS06500 (HBK86_06500)	-	1342106..1342714 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
HBK86_RS06505 (HBK86_06505)	-	1342724..1343278 (+)	555	WP_000841379.1	type II secretion system protein	-
HBK86_RS06510 (HBK86_06510)	xcpV	1343268..1343648 (+)	381	WP_000836910.1	type II secretion system minor pseudopilin GspI	Machinery gene
HBK86_RS06515 (HBK86_06515)	xcpW	1343648..1344349 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
HBK86_RS06520 (HBK86_06520)	gspK	1344349..1345308 (+)	960	WP_000301481.1	type II secretion system minor pseudopilin GspK	-
HBK86_RS06525 (HBK86_06525)	-	1345538..1346134 (+)	597	WP_000908451.1	6-pyruvoyl trahydropterin synthase family protein	-
HBK86_RS06530 (HBK86_06530)	ung	1346185..1346898 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
HBK86_RS06535 (HBK86_06535)	-	1346895..1348019 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
HBK86_RS06540 (HBK86_06540)	tadA	1348026..1348529 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
HBK86_RS06545 (HBK86_06545)	-	1348599..1349042 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=432068 HBK86_RS06515 WP_000594572.1 1343648..1344349(+) (xcpW) [Acinetobacter baumannii strain VB82]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=432068 HBK86_RS06515 WP_000594572.1 1343648..1344349(+) (xcpW) [Acinetobacter baumannii strain VB82]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991