Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VFU_RS16715 Genome accession   NC_016628
Coordinates   263805..264986 (+) Length   393 a.a.
NCBI ID   WP_014257352.1    Uniprot ID   -
Organism   Vibrio furnissii NCTC 11218     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 258805..269986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFU_RS16700 (vfu_B00266) - 259604..260599 (-) 996 WP_014257350.1 CobW family GTP-binding protein -
  VFU_RS16705 (vfu_B00267) clcA 261070..262467 (+) 1398 WP_014257351.1 H(+)/Cl(-) exchange transporter ClcA -
  VFU_RS16710 (vfu_B00268) - 262628..263587 (+) 960 WP_004728184.1 TDT family transporter -
  VFU_RS16715 (vfu_B00269) cqsA 263805..264986 (+) 1182 WP_014257352.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VFU_RS16720 (vfu_B00270) cqsS 265131..267182 (-) 2052 WP_014257353.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43548.50 Da        Isoelectric Point: 6.8927

>NTDB_id=43180 VFU_RS16715 WP_014257352.1 263805..264986(+) (cqsA) [Vibrio furnissii NCTC 11218]
MKSDAKNNRLPDSIQDRLNFFVRDLIESNQNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIKARLKQAIDTTHDSVFMS
AIFLQDDETKPSLEHQLAEFVNFDSCLLSQSGWNANTSLLQTVCAPGSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLRKQIQRHGPGLIVVDSIYSTIGTLAPLTELVHIAKETQCAILVDESHSLGTHGDKGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNANQCIPFVGYPAIFSSTILPYEIAALEATLEVIKSANDRRKNLFHNAQLLSQGLNKIGIHIRSQSQ
IIALETGDEKNTEKVRDYLEDNGVFGAVFCRPATSKTKNIIRLSLTSAVTEQQIDRILSVCHSAVKRGDMIFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=43180 VFU_RS16715 WP_014257352.1 263805..264986(+) (cqsA) [Vibrio furnissii NCTC 11218]
ATGAAATCTGATGCCAAAAATAATCGGTTACCTGACTCGATTCAGGACCGTTTGAATTTCTTCGTTCGCGATTTAATTGA
AAGCAATCAAAACGGTAAACATCTGGTATTAGGAAAGCGCCCCTCCCAAGGTGATATTGTTTTACAAAGTAACGATTACC
TCAGCCTTGCCAACCATCCATTGATCAAGGCGCGTTTAAAACAGGCTATTGATACCACGCACGACAGTGTGTTTATGTCG
GCTATTTTCTTACAAGATGATGAAACCAAACCTAGCCTAGAGCACCAACTGGCTGAGTTTGTCAATTTCGACTCGTGTCT
GTTGTCTCAGTCGGGTTGGAATGCCAATACGTCGCTACTGCAGACCGTCTGCGCACCGGGCAGCAATGTCTATATCGACT
TCTTTGCGCACATGTCGATGTGGGAAGGTGCGCGTTATGCCAATGCGAACATTCATCCGTTCATGCATAACAATTGTGAC
CATCTGCGCAAACAGATCCAACGTCATGGCCCTGGGCTCATTGTGGTCGATTCCATCTACAGCACCATTGGTACGCTTGC
GCCACTGACTGAATTGGTTCATATCGCCAAAGAGACTCAGTGCGCCATATTGGTCGATGAATCGCATTCACTCGGCACCC
ATGGCGATAAAGGCGCTGGCTTACTGGCGGAATTGGGGCTCTCCGATCAGGTCGATTTTATGACCGCGAGTTTGGCAAAA
ACATTTGCGTATCGTGCGGGGGTTATTTGGGCAAATAACAACGCGAATCAATGTATTCCTTTTGTGGGCTATCCGGCGAT
ATTCAGCTCGACGATATTACCGTATGAAATAGCCGCATTAGAAGCCACATTAGAGGTCATTAAATCGGCCAACGATCGTC
GCAAGAATTTATTTCACAATGCACAACTATTATCACAAGGATTAAATAAAATTGGTATTCACATTCGTAGCCAATCCCAA
ATTATCGCATTGGAAACAGGCGATGAAAAAAATACAGAAAAAGTCCGTGATTATTTAGAAGACAATGGCGTTTTCGGCGC
CGTATTTTGTCGACCGGCTACCTCGAAAACGAAAAATATTATTCGCTTGTCGTTAACCAGTGCCGTCACGGAACAACAGA
TCGACCGCATTTTGTCGGTGTGTCACAGCGCGGTAAAACGGGGGGATATGATCTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.312

97.964

0.669

Multiple sequence alignment