Detailed information NTG0043173

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: Y1U_RS09620
• Genome accession: NC_017927
• Coordinates: 1834877..1835977 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus MN-ZLW-002
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1829877..1840977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Y1U_RS09595 (Y1U_C1896)	pgsA	1830419..1830961 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
Y1U_RS09600 (Y1U_C1897)	-	1830974..1831831 (-)	858	WP_014608803.1	helix-turn-helix domain-containing protein	-
Y1U_RS09605 (Y1U_C1898)	yfmH	1831890..1833167 (-)	1278	WP_011226704.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
Y1U_RS09610 (Y1U_C1899)	yfmF	1833169..1834419 (-)	1251	WP_011681762.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
Y1U_RS09615 (Y1U_C1900)	yaaA	1834497..1834874 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
Y1U_RS09620 (Y1U_C1901)	recF	1834877..1835977 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
Y1U_RS09625 (Y1U_C1902)	guaB	1836146..1837627 (-)	1482	WP_014608806.1	IMP dehydrogenase	-
Y1U_RS09630 (Y1U_C1903)	trpS	1837804..1838826 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
Y1U_RS09635 (Y1U_C1904)	-	1839254..1840126 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=43173 Y1U_RS09620 WP_002947786.1 1834877..1835977(+) (recF) [Streptococcus thermophilus MN-ZLW-002]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=43173 Y1U_RS09620 WP_002947786.1 1834877..1835977(+) (recF) [Streptococcus thermophilus MN-ZLW-002]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432