Detailed information NTG0431686

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HB733_RS24085
• Genome accession: NZ_CP050330
• Coordinates: 5180831..5181703 (+)
• Length: 290 a.a.
• NCBI ID: WP_114231323.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain DVT779
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5175831..5186703

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB733_RS24070 (HB733_24125)	-	5177214..5177678 (-)	465	WP_003122079.1	pilin	-
HB733_RS24075 (HB733_24130)	pilB	5177909..5179609 (+)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HB733_RS24080 (HB733_24135)	pilC	5179613..5180830 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
HB733_RS24085 (HB733_24140)	pilD	5180831..5181703 (+)	873	WP_114231323.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
HB733_RS24090 (HB733_24145)	coaE	5181700..5182311 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
HB733_RS24095 (HB733_24150)	yacG	5182308..5182508 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
HB733_RS24100 (HB733_24155)	-	5182545..5182754 (-)	210	WP_003094660.1	hypothetical protein	-
HB733_RS24105 (HB733_24160)	-	5182860..5183549 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
HB733_RS24110 (HB733_24165)	-	5183546..5184016 (-)	471	WP_019486073.1	hypothetical protein	-
HB733_RS24115 (HB733_24170)	-	5184013..5184438 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
HB733_RS24120 (HB733_24175)	-	5184571..5185200 (+)	630	WP_015648058.1	DUF1780 domain-containing protein	-
HB733_RS24125 (HB733_24180)	-	5185197..5185646 (+)	450	WP_003161439.1	MOSC domain-containing protein	-
HB733_RS24130 (HB733_24185)	-	5185672..5185842 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31859.88 Da
• Isoelectric Point: 7.7068

>NTDB_id=431686 HB733_RS24085 WP_114231323.1 5180831..5181703(+) (pilD) [Pseudomonas aeruginosa strain DVT779]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKGAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=431686 HB733_RS24085 WP_114231323.1 5180831..5181703(+) (pilD) [Pseudomonas aeruginosa strain DVT779]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGGCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55	96.552	0.531
pilD	Vibrio campbellii strain DS40M4	52.297	97.586	0.51
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469