Detailed information NTG0431476

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HB744_RS08435
• Genome accession: NZ_CP050323
• Coordinates: 1790607..1791479 (-)
• Length: 290 a.a.
• NCBI ID: WP_023111807.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain DVT429
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1785607..1796479

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB744_RS08390 (HB744_08420)	-	1786468..1786638 (-)	171	WP_003094672.1	DUF3094 family protein	-
HB744_RS08395 (HB744_08425)	-	1786664..1787113 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
HB744_RS08400 (HB744_08430)	-	1787110..1787739 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
HB744_RS08405 (HB744_08435)	-	1787872..1788297 (+)	426	WP_016562341.1	GNAT family N-acetyltransferase	-
HB744_RS08410 (HB744_08440)	-	1788294..1788764 (+)	471	WP_003094664.1	hypothetical protein	-
HB744_RS08415 (HB744_08445)	-	1788761..1789450 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
HB744_RS08420 (HB744_08450)	-	1789556..1789765 (+)	210	WP_003094660.1	hypothetical protein	-
HB744_RS08425 (HB744_08455)	yacG	1789802..1790002 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
HB744_RS08430 (HB744_08460)	coaE	1789999..1790610 (-)	612	WP_023120878.1	dephospho-CoA kinase	-
HB744_RS08435 (HB744_08465)	pilD	1790607..1791479 (-)	873	WP_023111807.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
HB744_RS08440 (HB744_08470)	pilC	1791480..1792697 (-)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
HB744_RS08445 (HB744_08475)	pilB	1792701..1794401 (-)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HB744_RS08450 (HB744_08480)	-	1794632..1795096 (+)	465	WP_003107295.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31858.85 Da
• Isoelectric Point: 7.7068

>NTDB_id=431476 HB744_RS08435 WP_023111807.1 1790607..1791479(-) (pilD) [Pseudomonas aeruginosa strain DVT429]
MTLLDYLASHPQAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=431476 HB744_RS08435 WP_023111807.1 1790607..1791479(-) (pilD) [Pseudomonas aeruginosa strain DVT429]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCAGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	50.189	91.379	0.459