Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HB747_RS25245 Genome accession   NZ_CP050322
Coordinates   5438173..5438730 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain DVT729     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5433173..5443730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB747_RS25225 (HB747_25270) pilR 5434449..5435786 (+) 1338 WP_058177112.1 two-component system response regulator PilR Regulator
  HB747_RS25230 (HB747_25275) thiO 5435832..5436926 (-) 1095 WP_023114840.1 glycine oxidase ThiO -
  HB747_RS25235 (HB747_25280) - 5437061..5437570 (+) 510 WP_017002065.1 Tfp pilus assembly protein FimT/FimU -
  HB747_RS25240 (HB747_25285) - 5437676..5438182 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HB747_RS25245 (HB747_25290) pilV 5438173..5438730 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  HB747_RS25250 (HB747_25295) pilW 5438727..5439551 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  HB747_RS25255 (HB747_25300) pilX 5439548..5440135 (+) 588 WP_023114842.1 type 4a pilus minor pilin PilX -
  HB747_RS25260 (HB747_25305) pilY1 5440147..5443638 (+) 3492 WP_023114843.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=431451 HB747_RS25245 WP_003094697.1 5438173..5438730(+) (pilV) [Pseudomonas aeruginosa strain DVT729]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=431451 HB747_RS25245 WP_003094697.1 5438173..5438730(+) (pilV) [Pseudomonas aeruginosa strain DVT729]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978