Detailed information NTG0431305

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HAV28_RS03370
• Genome accession: NZ_CP050291
• Coordinates: 748723..749589 (-)
• Length: 288 a.a.
• NCBI ID: WP_016392896.1
• Uniprot ID: A0AAD0VV18
• Organism: Pseudomonas plecoglossicida strain PQLYC4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 743723..754589

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HAV28_RS03340 (HAV28_03340)	-	744734..746029 (-)	1296	WP_016392899.1	NAD(P)/FAD-dependent oxidoreductase	-
HAV28_RS03345 (HAV28_03345)	-	746114..746287 (-)	174	WP_008091951.1	DUF3094 domain-containing protein	-
HAV28_RS03350 (HAV28_03350)	-	746421..747050 (-)	630	WP_008091953.1	DUF1780 domain-containing protein	-
HAV28_RS03355 (HAV28_03355)	-	747085..747831 (+)	747	WP_042156621.1	energy-coupling factor ABC transporter permease	-
HAV28_RS03360 (HAV28_03360)	yacG	747903..748103 (-)	201	WP_008091956.1	DNA gyrase inhibitor YacG	-
HAV28_RS03365 (HAV28_03365)	coaE	748100..748723 (-)	624	WP_016392897.1	dephospho-CoA kinase	-
HAV28_RS03370 (HAV28_03370)	pilD	748723..749589 (-)	867	WP_016392896.1	A24 family peptidase	Machinery gene
HAV28_RS03375 (HAV28_03375)	-	749592..750800 (-)	1209	WP_016392895.1	type II secretion system F family protein	-
HAV28_RS03380 (HAV28_03380)	-	751018..751428 (+)	411	WP_016392894.1	pilin	-
HAV28_RS03390 (HAV28_03390)	-	751736..753049 (+)	1314	WP_016392893.1	integrase arm-type DNA-binding domain-containing protein	-
HAV28_RS03395 (HAV28_03395)	-	753119..753541 (+)	423	WP_144062867.1	hypothetical protein	-
HAV28_RS03400 (HAV28_03400)	-	753620..753892 (+)	273	WP_016392891.1	AlpA family transcriptional regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31763.99 Da
• Isoelectric Point: 6.9749

>NTDB_id=431305 HAV28_RS03370 WP_016392896.1 748723..749589(-) (pilD) [Pseudomonas plecoglossicida strain PQLYC4]
MTLSTFLAEQPTCFLTLATLLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLAPNEHERFDLCLPASHCPHCGHRIRA
WENIPVLSYLLLRGRCAACKGAISPRYPLVEAACAVLSLVVAWHFGATLEALLALPLTWCLLALSLIDADHGLLPDVLVL
PTLWLGLMVNAFGVFVPLTDALWGAVAGYLCLWTVFWLFKLVTGKEGMGYGDFKLLALIGAWAGWQILPLTLLLSSLLGA
VIGLCLLRWRRRPVSLAIPFGPYLAIAGWIAVLWGDEIYASYLQLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=431305 HAV28_RS03370 WP_016392896.1 748723..749589(-) (pilD) [Pseudomonas plecoglossicida strain PQLYC4]
ATGACCTTATCGACTTTCCTGGCTGAGCAGCCAACCTGTTTCCTCACCCTGGCAACCTTGCTCGGCCTGCTGGTGGGCAG
CTTCATCAACGTGCTGGTATATCGCCTGCCGATCATGCTGGAACGTCAGTGGCAGCGTGAGGCCCAGGAGGTGCTGGGGC
TGGCTCCCAATGAACACGAGCGCTTCGACCTGTGCTTGCCCGCTTCCCACTGCCCGCACTGTGGGCACCGCATTCGCGCG
TGGGAAAACATCCCGGTGTTGAGTTACCTGCTGCTGCGCGGTCGTTGCGCGGCGTGCAAAGGCGCAATCAGCCCGCGTTA
TCCGCTGGTGGAAGCCGCCTGCGCAGTGTTGTCGCTGGTAGTGGCCTGGCATTTCGGTGCCACGCTCGAGGCCTTGCTGG
CGCTGCCCTTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGATCACGGCCTGTTGCCAGATGTGCTGGTGCTG
CCGACGCTGTGGCTGGGGCTGATGGTCAATGCCTTCGGCGTCTTCGTGCCGCTGACTGACGCCCTGTGGGGCGCGGTGGC
TGGCTACCTCTGCCTGTGGACGGTCTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGCTGGCGCTGATCGGTGCCTGGGCGGGCTGGCAGATACTGCCCTTGACCCTGCTGCTGTCGTCGCTGCTGGGCGCG
GTGATTGGACTGTGCCTGCTGCGTTGGCGCCGCCGCCCGGTGAGCCTGGCGATACCCTTTGGGCCCTATCTGGCCATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCTTCCTACCTTCAATTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.708	96.181	0.507
pilD	Acinetobacter baumannii D1279779	50.357	97.222	0.49
pilD	Acinetobacter nosocomialis M2	49.643	97.222	0.483
pilD	Vibrio campbellii strain DS40M4	49.638	95.833	0.476
pilD	Neisseria gonorrhoeae MS11	48.679	92.014	0.448