Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DSUI_RS03210 Genome accession   NC_016616
Coordinates   658477..658839 (-) Length   120 a.a.
NCBI ID   WP_172974747.1    Uniprot ID   -
Organism   Azospira oryzae PS     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 653477..663839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSUI_RS03195 (Dsui_0657) - 655288..657486 (-) 2199 WP_014235768.1 methyl-accepting chemotaxis protein -
  DSUI_RS03200 (Dsui_0658) - 657566..658078 (-) 513 WP_014235769.1 chemotaxis protein CheW -
  DSUI_RS03205 (Dsui_0659) - 658093..658455 (-) 363 WP_014235770.1 response regulator transcription factor -
  DSUI_RS03210 (Dsui_0660) pilG 658477..658839 (-) 363 WP_172974747.1 response regulator Regulator
  DSUI_RS03215 (Dsui_0661) - 658966..659118 (-) 153 WP_043797679.1 rubredoxin -
  DSUI_RS03220 (Dsui_0662) thiD 659258..660100 (+) 843 WP_014235773.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DSUI_RS03225 (Dsui_0663) thiE 660093..660740 (+) 648 WP_014235774.1 thiamine phosphate synthase -
  DSUI_RS03230 (Dsui_0664) hemL 660727..662010 (+) 1284 WP_014235775.1 glutamate-1-semialdehyde 2,1-aminomutase -
  DSUI_RS03235 (Dsui_0665) ppk2 662089..663288 (-) 1200 WP_014235776.1 polyphosphate kinase 2 -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13371.43 Da        Isoelectric Point: 6.9223

>NTDB_id=43125 DSUI_RS03210 WP_172974747.1 658477..658839(-) (pilG) [Azospira oryzae PS]
MVIDDSNTIRRSAEIFLVQAGCQVVLAEDGFDALAKIADHQPDIVFCDIMMPRLDGYQTCALIKKNARFRNTPVIMLSSK
DGLFDRARGRMVGSDQYLTKPFTKDSLLQAVATYGPQQVQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=43125 DSUI_RS03210 WP_172974747.1 658477..658839(-) (pilG) [Azospira oryzae PS]
ATGGTGATTGACGATAGCAATACCATCCGTCGCAGCGCTGAAATCTTCCTGGTGCAGGCAGGATGCCAGGTGGTGCTGGC
CGAGGACGGGTTCGATGCCCTGGCCAAGATCGCCGACCACCAACCAGACATAGTCTTCTGCGACATCATGATGCCCCGTC
TGGACGGTTACCAGACCTGCGCCCTGATCAAGAAAAACGCCCGTTTCCGCAACACCCCGGTGATCATGCTGTCCTCCAAG
GACGGCCTTTTCGACCGGGCCCGGGGGCGTATGGTCGGTTCCGACCAGTACCTCACCAAGCCCTTTACCAAAGACAGTTT
GCTGCAGGCTGTGGCCACCTACGGGCCCCAGCAGGTTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

69.298

95

0.658
  pilH Synechocystis sp. PCC 6803

40.541

92.5

0.375

Multiple sequence alignment