Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   HB751_RS08985 Genome accession   NZ_CP050272
Coordinates   1837360..1838313 (+) Length   317 a.a.
NCBI ID   WP_019317550.1    Uniprot ID   -
Organism   Streptococcus mutans strain P6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1832360..1843313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB751_RS08945 (HB751_08945) - 1833126..1833509 (+) 384 WP_002263434.1 DUF1033 family protein -
  HB751_RS08950 (HB751_08950) comYA 1833639..1834580 (+) 942 WP_019804919.1 competence type IV pilus ATPase ComGA Machinery gene
  HB751_RS08955 (HB751_08955) comYB 1834516..1835547 (+) 1032 WP_255262721.1 competence type IV pilus assembly protein ComGB Machinery gene
  HB751_RS08960 (HB751_08960) comYC 1835547..1835861 (+) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  HB751_RS08965 (HB751_08965) comYD 1835848..1836252 (+) 405 WP_002263438.1 competence type IV pilus minor pilin ComGD Machinery gene
  HB751_RS08970 (HB751_08970) comYE 1836224..1836517 (+) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  HB751_RS08975 (HB751_08975) comYF 1836504..1836938 (+) 435 WP_002274770.1 competence type IV pilus minor pilin ComGF Machinery gene
  HB751_RS08980 (HB751_08980) comYG 1836916..1837305 (+) 390 WP_002263441.1 competence type IV pilus minor pilin ComGG Machinery gene
  HB751_RS08985 (HB751_08985) comYH 1837360..1838313 (+) 954 WP_019317550.1 class I SAM-dependent methyltransferase Machinery gene
  HB751_RS08990 (HB751_08990) - 1838372..1839571 (+) 1200 WP_002263443.1 acetate kinase -
  HB751_RS08995 (HB751_08995) tnpA 1839784..1840247 (+) 464 Protein_1739 IS200/IS605 family transposase -
  HB751_RS09000 (HB751_09000) - 1840875..1841120 (+) 246 WP_002263444.1 helix-turn-helix transcriptional regulator -
  HB751_RS09005 (HB751_09005) - 1841089..1841529 (+) 441 WP_002263445.1 hypothetical protein -
  HB751_RS09010 (HB751_09010) - 1841582..1842244 (+) 663 WP_002263446.1 type II CAAX endopeptidase family protein -
  HB751_RS09015 (HB751_09015) proC 1842329..1843099 (-) 771 WP_002263447.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36274.53 Da        Isoelectric Point: 5.2379

>NTDB_id=431214 HB751_RS08985 WP_019317550.1 1837360..1838313(+) (comYH) [Streptococcus mutans strain P6]
MDFEKIEAAYNLLLDNCQRLETQLHTHLYDALIEQNACYLGAEGADDFIKENNKKLRQLNLSKEEWRRSFQFIFIKATQS
QQLQSNHQFTPDSIGFIILYLLEGLTNKSQLDIIEIGSGTGNLAETIVNNSSKSIDYMGIEVDDLLIDLSASIADVLDSS
VHFVQEDAVRPQILKESDVIISDLPVGFYPNDKIAQRYQVAAKLGHTYAHHLLMEQSLKYLKKEGLAIFLAPVDLLTSEQ
SPLLKKWLQNNVTILSVISLPEAIFKQKSNIKSIFVLKKQSQQSLESFVYPLTDLQDPEVLRRFMKNFKKWKEDNVF

Nucleotide


Download         Length: 954 bp        

>NTDB_id=431214 HB751_RS08985 WP_019317550.1 1837360..1838313(+) (comYH) [Streptococcus mutans strain P6]
ATGGATTTTGAAAAAATAGAAGCTGCCTATAACTTACTGTTAGATAATTGTCAAAGGCTGGAAACTCAACTTCATACTCA
CCTTTATGATGCCTTAATTGAGCAAAATGCTTGCTATCTAGGTGCTGAAGGTGCTGATGATTTTATTAAAGAAAATAATA
AAAAACTGCGTCAGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTAGTTTTCAATTTATTTTTATTAAGGCTACTCAAAGT
CAGCAATTACAGTCAAATCACCAATTTACACCAGATAGTATTGGTTTTATTATTCTTTATTTATTGGAAGGTTTAACAAA
TAAGAGTCAGTTAGACATCATTGAAATTGGTTCTGGGACAGGAAATCTTGCAGAGACTATTGTGAATAACAGTTCAAAAA
GCATTGATTATATGGGGATTGAGGTTGACGATCTGTTAATTGATTTATCAGCAAGTATTGCCGATGTATTGGATTCTTCT
GTGCATTTTGTTCAAGAAGATGCAGTGCGGCCTCAGATTTTAAAAGAAAGTGATGTCATTATCAGTGATCTGCCAGTTGG
CTTTTATCCCAATGATAAAATTGCTCAGCGTTATCAGGTTGCAGCCAAGTTAGGACATACTTATGCACATCATCTTTTGA
TGGAGCAATCGCTTAAGTATTTAAAAAAAGAGGGACTTGCTATTTTTTTAGCGCCAGTGGATCTTTTAACTAGTGAGCAG
AGTCCTTTGCTTAAAAAGTGGTTACAGAACAATGTAACTATTTTATCCGTTATTTCTTTACCTGAGGCAATTTTTAAACA
GAAAAGTAATATAAAGTCAATCTTTGTCTTAAAGAAACAATCGCAACAAAGTTTGGAAAGTTTTGTCTATCCTTTGACAG
ATTTACAAGACCCCGAAGTTTTAAGACGATTTATGAAAAATTTTAAAAAGTGGAAGGAAGATAATGTCTTTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(77-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

99.369

100

0.994
  comYH Streptococcus mutans UA140

99.369

100

0.994