Detailed information NTG0043120

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: DSUI_RS00670
• Genome accession: NC_016616
• Coordinates: 136563..137936 (-)
• Length: 457 a.a.
• NCBI ID: WP_014235260.1
• Uniprot ID: G8QM42
• Organism: Azospira oryzae PS
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 131563..142936

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DSUI_RS00655 (Dsui_0132)	-	133146..134303 (+)	1158	WP_014235257.1	pyridoxal phosphate-dependent aminotransferase	-
DSUI_RS00660 (Dsui_0133)	-	134449..135519 (-)	1071	WP_014235258.1	hypothetical protein	-
DSUI_RS00665 (Dsui_0134)	ampD	135991..136563 (-)	573	WP_014235259.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
DSUI_RS00670 (Dsui_0135)	pilR	136563..137936 (-)	1374	WP_014235260.1	sigma-54-dependent transcriptional regulator	Regulator
DSUI_RS00675 (Dsui_0136)	-	137917..139530 (-)	1614	WP_014235261.1	two-component system sensor histidine kinase NtrB	-
DSUI_RS18400 (Dsui_0137)	-	139540..139764 (-)	225	WP_014235262.1	PP0621 family protein	-
DSUI_RS17935 (Dsui_0138)	-	140055..141131 (+)	1077	WP_014235263.1	integrase	-
DSUI_RS00680 (Dsui_0139)	-	141603..141935 (-)	333	WP_014235264.1	hypothetical protein	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49609.41 Da
• Isoelectric Point: 4.7849

>NTDB_id=43120 DSUI_RS00670 WP_014235260.1 136563..137936(-) (pilR) [Azospira oryzae PS]
MAQAKSERRARGALARVLVVDDEADIRELVDLTLSRMGLAADCAGTVAEAREFLARESYQLCLTDMRLPDGEGLELVRLI
GEQYSETPVAVITAFGSTENAVAALKAGAFDYLAKPVALDQLRTLIKSAIDLPVASAAEGAPRSEALQLLGDSRAMSTVR
EIIAKLARSQAPVYISGESGCGKELAARLIHEQSNRSQAPFVPVNCGAIPENLMESEFFGYRKGAFTGAEQDREGFFQAA
GGGTLFLDEVADLPLSMQVKLLRAIQEKRVRKVGATVEEAVDVRLICATHQDLKACVEAGTFRQDLYYRLNVIELRMPPL
RERAEDIPQLARACLDRLAHQASALPLTSAAEAALCRYTFPGNVRELENILERATALCSGSEIDEGDLQLSLADDGHPDA
GSEGRGGESLDTYLDRLERQAIQEAVVQTQGNRTAAARLLGITFRSLRYRMARLGIE

Nucleotide

• Length: 1374 bp

>NTDB_id=43120 DSUI_RS00670 WP_014235260.1 136563..137936(-) (pilR) [Azospira oryzae PS]
ATGGCTCAGGCCAAAAGTGAACGCCGCGCCAGGGGGGCGCTGGCCCGGGTGCTGGTGGTGGATGACGAAGCGGATATCCG
GGAACTGGTGGACCTCACCCTGTCCCGCATGGGGCTGGCGGCGGATTGCGCCGGCACCGTGGCCGAGGCTCGGGAGTTCC
TTGCCCGGGAGTCTTACCAGCTGTGCCTGACCGACATGCGTTTGCCCGATGGGGAAGGGCTGGAACTGGTGCGCCTCATC
GGCGAGCAGTACAGCGAGACGCCGGTGGCCGTGATCACCGCCTTCGGCAGCACCGAGAACGCGGTGGCGGCCCTCAAGGC
CGGGGCCTTCGACTATCTGGCCAAGCCGGTGGCCCTGGATCAGCTGCGTACCCTGATCAAGTCGGCCATCGATCTGCCGG
TGGCATCCGCGGCCGAGGGGGCGCCCCGCAGCGAGGCTCTGCAGCTGCTCGGCGATTCCCGGGCCATGAGCACGGTGCGG
GAGATCATCGCCAAGCTGGCCCGCAGCCAGGCGCCGGTTTACATCTCCGGCGAATCCGGCTGCGGCAAGGAACTGGCGGC
CCGCCTCATCCACGAGCAGAGCAACCGCAGCCAGGCGCCTTTCGTTCCGGTGAACTGCGGGGCCATCCCCGAGAACCTCA
TGGAAAGCGAGTTCTTCGGTTATCGCAAGGGCGCCTTCACCGGTGCCGAGCAGGATCGGGAAGGATTCTTCCAGGCAGCG
GGGGGCGGCACCCTGTTTCTCGACGAGGTGGCCGACCTGCCCCTGTCCATGCAGGTCAAGCTGCTGCGGGCCATCCAGGA
AAAGCGGGTGCGCAAGGTGGGCGCCACCGTGGAGGAGGCGGTGGATGTGCGCCTCATCTGTGCCACCCACCAGGACCTGA
AGGCCTGCGTCGAGGCCGGCACCTTCCGCCAGGATTTGTACTACCGTCTCAACGTCATCGAGTTGCGCATGCCGCCGCTG
CGGGAGCGGGCCGAGGACATTCCCCAGCTGGCTCGTGCCTGTCTCGACCGTCTGGCCCATCAGGCGTCGGCGTTGCCGCT
GACGTCCGCGGCCGAAGCGGCGCTGTGTCGCTACACCTTCCCCGGCAACGTCCGCGAACTGGAGAATATTCTGGAGCGGG
CCACGGCGCTATGCAGTGGCAGCGAGATCGACGAAGGCGACCTGCAGCTTTCCCTTGCCGATGACGGTCATCCCGATGCC
GGTTCCGAAGGGCGCGGCGGCGAGTCTCTCGATACCTATCTGGACCGTCTGGAGCGCCAGGCGATTCAGGAGGCGGTAGT
TCAGACCCAGGGCAATCGCACGGCGGCGGCGCGCCTGCTCGGCATCACCTTCCGCTCCCTGCGCTATCGCATGGCCCGTC
TGGGGATCGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (150-315)

• Response regulator receiver domain (Response_reg) (17-126)

• Bacterial regulatory protein, Fis family (HTH_8) (414-453)

3D structure

• AlphaFold DB: G8QM42

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.802	98.249	0.597
pilR	Acinetobacter baumannii strain A118	46.104	100	0.466