Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ILP76_RS01000 Genome accession   NZ_CP062469
Coordinates   236723..237835 (-) Length   370 a.a.
NCBI ID   WP_000775115.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA - AMRF 4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 231723..242835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILP76_RS00990 (ILP76_00990) gyrA 232079..234742 (-) 2664 WP_194085654.1 DNA gyrase subunit A -
  ILP76_RS00995 (ILP76_00995) gyrB 234779..236713 (-) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ILP76_RS01000 (ILP76_01000) recF 236723..237835 (-) 1113 WP_000775115.1 DNA replication/repair protein RecF Machinery gene
  ILP76_RS01005 (ILP76_01005) yaaA 237832..238077 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  ILP76_RS01010 (ILP76_01010) dnaN 238458..239591 (-) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  ILP76_RS01015 (ILP76_01015) dnaA 239869..241230 (-) 1362 WP_001290432.1 chromosomal replication initiator protein DnaA -
  ILP76_RS01020 (ILP76_01020) rpmH 241961..242098 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  ILP76_RS01025 (ILP76_01025) rnpA 242219..242572 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42401.40 Da        Isoelectric Point: 6.4362

>NTDB_id=431185 ILP76_RS01000 WP_000775115.1 236723..237835(-) (recF) [Staphylococcus aureus strain MRSA - AMRF 4]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPVLLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=431185 ILP76_RS01000 WP_000775115.1 236723..237835(-) (recF) [Staphylococcus aureus strain MRSA - AMRF 4]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGACTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCGTCTTATTATTAGATGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.062

100

0.495