Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   HB752_RS08055 Genome accession   NZ_CP050271
Coordinates   1647785..1648687 (-) Length   300 a.a.
NCBI ID   WP_167311854.1    Uniprot ID   -
Organism   Streptococcus mutans strain S1     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642785..1653687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB752_RS08045 (HB752_08045) ulaG 1644090..1645181 (-) 1092 WP_002263526.1 L-ascorbate 6-phosphate lactonase -
  HB752_RS08050 (HB752_08050) - 1645761..1647428 (-) 1668 WP_002263525.1 transcription antiterminator -
  HB752_RS08055 (HB752_08055) comB/nlmE 1647785..1648687 (-) 903 WP_167311854.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  HB752_RS08060 (HB752_08060) comA/nlmT 1648701..1650983 (-) 2283 WP_002266017.1 peptide cleavage/export ABC transporter Regulator
  HB752_RS08065 (HB752_08065) - 1652247..1652525 (-) 279 WP_002264456.1 hypothetical protein -
  HB752_RS08070 (HB752_08070) - 1652763..1652972 (-) 210 WP_002263944.1 hypothetical protein -
  HB752_RS08075 (HB752_08075) - 1653457..1653618 (-) 162 WP_162470319.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34115.51 Da        Isoelectric Point: 10.4518

>NTDB_id=431140 HB752_RS08055 WP_167311854.1 1647785..1648687(-) (comB/nlmE) [Streptococcus mutans strain S1]
MDPKFLQSAEFYRRRYHNFATLLIVPLVCLIIFLVIFLCFAKKEITVISTGEVAPTKVVDVIQSYSDSSIIKNNLDNNAA
VEKGDVLIEYSENASPNRQTEQKNIIKERQKREEKEKKKHQKSKKKKKSKSKKASKDKKKKSKDKESSSDDENETKKVSI
FASEDGIIHTNPKYNGANIIPKQTEIAQIYPDIQKTRKVLITYYASSDDVVSMKKGQTARLSLEKKGNDKVVIEGKINNV
ASSATTTKKGNLFKVTAKVKVSKKNSKLIKYGMTGKTVTVIDKKTYFDYFKDKLLHKMDN

Nucleotide


Download         Length: 903 bp        

>NTDB_id=431140 HB752_RS08055 WP_167311854.1 1647785..1648687(-) (comB/nlmE) [Streptococcus mutans strain S1]
ATGGATCCTAAATTTTTACAAAGTGCAGAATTTTATAGGAGACGCTATCATAATTTTGCGACACTATTAATTGTTCCTTT
GGTCTGCTTGATTATCTTCTTGGTCATATTCCTTTGTTTTGCTAAAAAAGAAATTACAGTGATTTCTACTGGTGAAGTTG
CACCAACAAAGGTTGTAGATGTTATCCAATCTTACAGTGACAGTTCAATCATTAAAAATAATTTAGATAATAATGCAGCT
GTTGAGAAGGGAGACGTTTTAATTGAATATTCAGAAAATGCCAGTCCAAACCGTCAGACTGAACAAAAGAATATTATAAA
AGAAAGACAAAAACGAGAAGAGAAGGAAAAGAAAAAACACCAAAAGAGCAAGAAAAAGAAGAAGTCTAAGAGCAAGAAAG
CTTCCAAAGATAAGAAAAAGAAATCGAAAGACAAGGAAAGCAGCTCTGACGATGAAAATGAGACAAAAAAGGTTTCGATT
TTTGCTTCAGAAGATGGTATTATTCATACCAATCCCAAATATAATGGTGCCAATATTATTCCGAAGCAAACCGAGATTGC
TCAAATCTATCCTGATATTCAAAAAACAAGAAAAGTGTTAATCACCTATTATGCTTCTTCTGATGATGTTGTTTCTATGA
AAAAGGGGCAAACCGCTCGTCTTTCCTTGGAAAAAAAGGGAAATGACAAGGTTGTTATTGAAGGAAAAATTAACAATGTC
GCTTCATCAGCAACTACTACTAAAAAAGGAAATCTCTTTAAGGTTACTGCCAAAGTAAAGGTTTCTAAGAAAAATAGCAA
ACTCATCAAGTATGGTATGACAGGCAAGACAGTCACTGTCATTGATAAAAAGACTTATTTTGATTATTTCAAAGATAAAT
TACTGCATAAAATGGATAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(160-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

99.667

100

0.997