Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   HB753_RS00470 Genome accession   NZ_CP050270
Coordinates   96415..96645 (+) Length   76 a.a.
NCBI ID   WP_002309764.1    Uniprot ID   -
Organism   Streptococcus mutans strain S4     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Genomic Context

Location: 91415..101645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB753_RS00445 (HB753_00445) - 92007..92633 (+) 627 WP_002273094.1 hypothetical protein -
  HB753_RS00450 (HB753_00450) - 92681..93319 (+) 639 WP_002271525.1 VTT domain-containing protein -
  HB753_RS00455 (HB753_00455) comE/blpR 93790..94542 (+) 753 WP_002298154.1 response regulator transcription factor Regulator
  HB753_RS00460 (HB753_00460) - 94539..95865 (+) 1327 Protein_88 sensor histidine kinase -
  HB753_RS00465 (HB753_00465) comC/blpC 96007..96147 (-) 141 WP_002270250.1 ComC/BlpC family leader-containing pheromone/bacteriocin Regulator
  HB753_RS00470 (HB753_00470) cipB 96415..96645 (+) 231 WP_002309764.1 Blp family class II bacteriocin Regulator
  HB753_RS00475 (HB753_00475) - 96776..97177 (+) 402 WP_002310604.1 hypothetical protein -
  HB753_RS00480 (HB753_00480) - 98557..98976 (+) 420 WP_019804903.1 hypothetical protein -
  HB753_RS00485 (HB753_00485) - 99123..99527 (+) 405 WP_002263912.1 hypothetical protein -
  HB753_RS10325 - 99650..99862 (-) 213 Protein_94 IS3 family transposase -
  HB753_RS00490 (HB753_00490) - 100302..100466 (+) 165 WP_002265308.1 hypothetical protein -
  HB753_RS00495 (HB753_00495) - 100871..101083 (+) 213 WP_002309424.1 Blp family class II bacteriocin -
  HB753_RS00500 (HB753_00500) - 101248..101437 (+) 190 Protein_97 Blp family class II bacteriocin -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 7258.07 Da        Isoelectric Point: 3.7781

>NTDB_id=431031 HB753_RS00470 WP_002309764.1 96415..96645(+) (cipB) [Streptococcus mutans strain S4]
MNTQAFEQFNVIDNEALSAIEGGGRGWNCAAGIALGAGQGYMATAGGTAFLGPYAIGTGAFGAIAGGIGGALNSCG

Nucleotide


Download         Length: 231 bp        

>NTDB_id=431031 HB753_RS00470 WP_002309764.1 96415..96645(+) (cipB) [Streptococcus mutans strain S4]
ATGAATACACAAGCATTTGAACAATTTAACGTAATAGATAATGAAGCACTTTCAGCTATTGAAGGTGGGGGCCGCGGATG
GAATTGTGCAGCAGGTATTGCTCTAGGTGCTGGGCAAGGTTATATGGCTACTGCAGGCGGTACAGCATTTCTTGGTCCAT
ATGCTATTGGCACTGGTGCCTTTGGGGCTATTGCTGGAGGAATCGGAGGAGCTCTTAATTCCTGTGGTTAG

Domains

Predicted by InterproScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

97.368

100

0.974