Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   VEJY3_RS13000 Genome accession   NC_016613
Coordinates   2899222..2899836 (+) Length   204 a.a.
NCBI ID   WP_014232943.1    Uniprot ID   -
Organism   Vibrio sp. EJY3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2894222..2904836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEJY3_RS12980 (VEJY3_12970) - 2894448..2895359 (-) 912 WP_014232939.1 ABC transporter ATP-binding protein -
  VEJY3_RS12985 (VEJY3_12975) - 2895667..2897337 (-) 1671 WP_014232940.1 SulP family inorganic anion transporter -
  VEJY3_RS12990 (VEJY3_12980) can 2897617..2898285 (+) 669 WP_014232941.1 carbonate dehydratase -
  VEJY3_RS12995 (VEJY3_12985) hpt 2898374..2898904 (-) 531 WP_014232942.1 hypoxanthine phosphoribosyltransferase -
  VEJY3_RS13000 (VEJY3_12990) opaR 2899222..2899836 (+) 615 WP_014232943.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  VEJY3_RS13005 (VEJY3_12995) lpdA 2899961..2901388 (-) 1428 WP_014232944.1 dihydrolipoyl dehydrogenase -
  VEJY3_RS13010 (VEJY3_13000) aceF 2901655..2903556 (-) 1902 WP_014232945.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23673.99 Da        Isoelectric Point: 6.3780

>NTDB_id=43093 VEJY3_RS13000 WP_014232943.1 2899222..2899836(+) (opaR) [Vibrio sp. EJY3]
MDSIAKRARTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARDNIANITSAMIELVNQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQMLVQNMFIKAIERGEICNTHQPE
HLTNLFHGICYSLFVQANRFKGEDELKNLVSSYLDMLCIYDRNQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=43093 VEJY3_RS13000 WP_014232943.1 2899222..2899836(+) (opaR) [Vibrio sp. EJY3]
ATGGACTCAATTGCAAAGAGAGCCCGTACTAGGCTTTCCCCTATTAAGCGTAAACAACAATTGATGGAAATCGCGTTGGA
AGTATTTGCGCGTCGCGGTATTGGCCGTGGTGGTCATGCGGATATCGCTGAAATCGCGCAGGTTTCTGTTGCTACCGTTT
TTAACTACTTCCCAACTCGCGAAGATCTCGTTGATGAAGTGCTGAACCACGTTGTACGTCAGTTCTCGAACTTCCTTTCA
GATAACATCGATTTAGACCTACACGCTCGTGACAATATTGCGAATATCACCAGCGCAATGATTGAGCTAGTCAATCAAGA
TTGCCACTGGCTGAAAGTATGGTTTGAGTGGAGCGCATCGACACGCGACGAAGTTTGGCCACTATTCGTGTCAACCAACC
GCACCAACCAGATGTTGGTACAGAACATGTTTATCAAAGCAATTGAGCGTGGTGAAATCTGTAACACGCATCAACCAGAA
CATTTGACTAACTTGTTCCACGGCATTTGCTACTCACTGTTTGTACAAGCAAACCGTTTTAAGGGTGAAGATGAGCTGAA
AAACCTCGTAAGTTCATACCTTGATATGCTTTGTATTTACGATCGCAATCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

91.584

99.02

0.907
  hapR Vibrio cholerae C6706

71.212

97.059

0.691
  hapR Vibrio cholerae strain A1552

71.212

97.059

0.691

Multiple sequence alignment