Detailed information NTG0430761

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HBA17_RS13840
• Genome accession: NZ_CP050246
• Coordinates: 2880014..2880814 (-)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain P90
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2875014..2885814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBA17_RS13820 (HBA17_14055)	dksA	2875594..2876049 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
HBA17_RS13825 (HBA17_14060)	sfsA	2876212..2876928 (-)	717	WP_146720547.1	DNA/RNA nuclease SfsA	-
HBA17_RS13830 (HBA17_14065)	thpR	2876928..2877464 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
HBA17_RS13835 (HBA17_14070)	hrpB	2877537..2879966 (+)	2430	WP_146720548.1	ATP-dependent helicase HrpB	-
HBA17_RS13840 (HBA17_14075)	pilD	2880014..2880814 (-)	801	WP_002888947.1	A24 family peptidase	Machinery gene
HBA17_RS13845 (HBA17_14080)	-	2880811..2881557 (-)	747	WP_146720549.1	type II secretion system protein N	-
HBA17_RS13850 (HBA17_14085)	-	2881547..2882032 (-)	486	WP_004151943.1	type II secretion system protein M	-
HBA17_RS13855 (HBA17_14090)	gspL	2882025..2883218 (-)	1194	WP_146720550.1	type II secretion system protein GspL	-
HBA17_RS13860 (HBA17_14095)	gspK	2883205..2884192 (-)	988	Protein_2687	type II secretion system minor pseudopilin GspK	-
HBA17_RS13865 (HBA17_14100)	gspJ	2884189..2884785 (-)	597	WP_146720551.1	type II secretion system minor pseudopilin GspJ	-
HBA17_RS13870 (HBA17_14105)	gspI	2884782..2885147 (-)	366	WP_146720552.1	type II secretion system minor pseudopilin GspI	-
HBA17_RS13875 (HBA17_14110)	gspH	2885144..2885659 (-)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=430761 HBA17_RS13840 WP_002888947.1 2880014..2880814(-) (pilD) [Klebsiella pneumoniae strain P90]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=430761 HBA17_RS13840 WP_002888947.1 2880014..2880814(-) (pilD) [Klebsiella pneumoniae strain P90]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGTGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425