Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   HA248_RS02550 Genome accession   NZ_CP050175
Coordinates   493375..494106 (+) Length   243 a.a.
NCBI ID   WP_000889921.1    Uniprot ID   A0AAI8ZWM3
Organism   Streptococcus pneumoniae strain PZ900701590     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 488375..499106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HA248_RS02525 (HA248_02520) - 490026..490430 (+) 405 WP_000343113.1 hypothetical protein -
  HA248_RS02530 (HA248_02525) dnaJ 490774..491910 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  HA248_RS02535 (HA248_02530) - 492244..492438 (-) 195 WP_001808905.1 hypothetical protein -
  HA248_RS02540 (HA248_02535) - 492600..492887 (-) 288 WP_000777753.1 hypothetical protein -
  HA248_RS02545 (HA248_02540) - 492897..493307 (-) 411 WP_001278301.1 HIT family protein -
  HA248_RS02550 (HA248_02545) pptA 493375..494106 (+) 732 WP_000889921.1 ABC transporter ATP-binding protein Regulator
  HA248_RS02555 (HA248_02550) - 494103..495152 (+) 1050 WP_000653771.1 ABC transporter permease -
  HA248_RS02560 (HA248_02555) - 495320..495649 (-) 330 WP_000132572.1 hypothetical protein -
  HA248_RS02565 (HA248_02560) - 495926..496264 (+) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  HA248_RS02570 (HA248_02565) comE/blpR 496269..497006 (+) 738 WP_001219122.1 LytTR family DNA-binding domain-containing protein Regulator
  HA248_RS02575 (HA248_02570) - 497019..498359 (+) 1341 WP_000275285.1 sensor histidine kinase -
  HA248_RS02580 (HA248_02575) blpC 498404..498559 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26998.46 Da        Isoelectric Point: 4.7792

>NTDB_id=430522 HA248_RS02550 WP_000889921.1 493375..494106(+) (pptA) [Streptococcus pneumoniae strain PZ900701590]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVADPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=430522 HA248_RS02550 WP_000889921.1 493375..494106(+) (pptA) [Streptococcus pneumoniae strain PZ900701590]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGCGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704