Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BFO_RS13755 Genome accession   NC_016610
Coordinates   3371388..3372758 (+) Length   456 a.a.
NCBI ID   WP_014226394.1    Uniprot ID   G8UJE6
Organism   Tannerella forsythia 92A2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3366388..3377758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFO_RS13725 (BFO_3324) - 3366407..3366922 (-) 516 WP_014226388.1 HAD family hydrolase -
  BFO_RS13730 (BFO_3325) - 3366928..3367692 (-) 765 WP_014226389.1 Rossmann-like and DUF2520 domain-containing protein -
  BFO_RS13735 (BFO_3326) - 3367689..3368252 (-) 564 WP_014226390.1 nitroreductase family protein -
  BFO_RS13740 (BFO_3327) - 3368554..3369642 (-) 1089 WP_014226391.1 phosphotransferase enzyme family protein -
  BFO_RS13745 - 3369721..3369975 (-) 255 WP_041590973.1 type B 50S ribosomal protein L31 -
  BFO_RS13750 (BFO_3329) - 3370199..3371194 (+) 996 WP_041590974.1 class II fructose-bisphosphate aldolase -
  BFO_RS13755 (BFO_3330) radA 3371388..3372758 (+) 1371 WP_014226394.1 DNA repair protein RadA Machinery gene
  BFO_RS13760 (BFO_3331) - 3372824..3373120 (+) 297 WP_041590975.1 nucleotidyltransferase family protein -
  BFO_RS13765 (BFO_3332) - 3373104..3373448 (+) 345 WP_014226396.1 DUF86 domain-containing protein -
  BFO_RS16330 - 3373477..3373635 (+) 159 Protein_2763 DNA repair protein RadA -
  BFO_RS13770 (BFO_3334) - 3373744..3374883 (+) 1140 WP_014226398.1 hypothetical protein -
  BFO_RS13775 (BFO_3336) - 3374969..3376555 (+) 1587 WP_014226399.1 NAD(P)/FAD-dependent oxidoreductase -
  BFO_RS15765 (BFO_3335) - 3376546..3376731 (-) 186 WP_141729020.1 hypothetical protein -
  BFO_RS13780 (BFO_3337) - 3376752..3377000 (-) 249 WP_014226401.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50004.82 Da        Isoelectric Point: 6.8894

>NTDB_id=43050 BFO_RS13755 WP_014226394.1 3371388..3372758(+) (radA) [Tannerella forsythia 92A2]
MAKVKSVYICSDCGAESPKWVGKCPSCGAWNTYVEELVKKEPAAWRSVPGIVHEGMKPRLLRDVTAKEETRIDMHDAELN
RVLGGGLVKGSLVLVGGEPGIGKSTLVLQTVLQMKDLHTLYVSGEESAQQLKMRADRLAGKDTNMGNCHVYCETNLEQVF
VQAQNLQPDLLIIDSIQTMFTDRAESSPGSITQVRECSAAVLKFAKETGTPVLMIGHINKEGSIAGPKVLEHIVDTVLQF
EGDQHYMYRILRSIKNRFGSTSELGIYEMRQSGLRQVENPSELLLTEGHEGLSGVAIAAAMEGARPFLIETQSLVSSAVY
GTPQRSATGFDLRRMNMLLAVLEKRAGFKLVQKDVFLNIAGGLRVSDPAIDLPVISAVLSSSLDIPIDRSTCMAGEVGLS
GEIRPVNRIEQRIQEAGKLGFTRMIVPQMKGLEALESKMKIFQVRKVEEAFRELFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=43050 BFO_RS13755 WP_014226394.1 3371388..3372758(+) (radA) [Tannerella forsythia 92A2]
ATGGCTAAAGTTAAATCGGTATATATCTGTTCCGACTGCGGTGCCGAATCGCCCAAGTGGGTCGGCAAATGTCCGTCGTG
CGGCGCGTGGAACACCTATGTAGAAGAACTTGTAAAGAAAGAACCTGCTGCATGGCGGTCTGTTCCGGGAATCGTACATG
AAGGCATGAAGCCCCGGCTGCTGCGCGACGTCACGGCAAAAGAAGAAACACGTATCGATATGCACGATGCGGAGTTGAAC
CGTGTGTTAGGCGGCGGGTTAGTCAAAGGTTCGCTGGTACTTGTCGGGGGAGAGCCGGGCATCGGAAAATCTACGCTGGT
ATTGCAAACCGTTTTGCAGATGAAAGATTTGCATACGCTCTACGTTTCGGGCGAAGAGAGCGCTCAACAGTTAAAGATGC
GTGCCGACCGTCTGGCCGGAAAAGACACCAATATGGGCAATTGCCATGTGTATTGCGAAACGAATCTCGAACAGGTTTTC
GTACAGGCGCAGAACCTCCAACCCGATCTCTTGATCATCGATTCCATCCAGACGATGTTTACCGACCGGGCCGAATCGTC
GCCGGGCAGCATCACTCAGGTGCGCGAGTGCAGCGCAGCCGTGCTGAAGTTTGCCAAAGAGACGGGAACGCCCGTGCTGA
TGATCGGACATATCAATAAGGAAGGCAGCATAGCCGGGCCGAAGGTACTCGAACACATTGTCGATACGGTGTTGCAGTTC
GAGGGCGACCAGCATTACATGTATCGCATCCTGCGGAGCATCAAGAACCGTTTCGGAAGCACTTCCGAGTTAGGCATCTA
TGAGATGCGGCAGAGCGGATTGCGGCAGGTCGAGAATCCCTCCGAACTGCTTCTGACCGAAGGTCACGAGGGGCTTAGCG
GCGTAGCCATCGCGGCAGCAATGGAGGGCGCCCGTCCCTTCCTGATCGAGACGCAGTCGCTCGTCAGCAGCGCTGTATAC
GGGACGCCTCAGCGCAGTGCGACGGGGTTCGACCTCCGGCGGATGAATATGTTACTGGCCGTGCTGGAAAAACGCGCCGG
CTTCAAACTCGTGCAGAAAGACGTTTTCCTGAACATCGCAGGAGGGCTGCGTGTAAGCGATCCGGCCATCGACCTGCCGG
TGATCAGCGCCGTATTGTCGTCGAGTTTGGACATCCCGATCGATCGCAGCACGTGTATGGCGGGCGAAGTGGGGCTCTCG
GGCGAGATACGCCCGGTCAACCGTATCGAACAGCGCATTCAGGAAGCCGGGAAGCTCGGATTCACCCGCATGATCGTTCC
GCAGATGAAAGGACTGGAAGCGTTGGAAAGCAAAATGAAAATCTTTCAGGTCAGAAAAGTAGAAGAAGCCTTCCGGGAGT
TATTCGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

AAA domain (AAA_25)

(72-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G8UJE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.321

100

0.515
  radA Streptococcus mitis SK321

47.598

100

0.478
  radA Streptococcus pneumoniae D39

47.38

100

0.476
  radA Streptococcus pneumoniae TIGR4

47.38

100

0.476
  radA Streptococcus pneumoniae R6

47.38

100

0.476
  radA Streptococcus pneumoniae Rx1

47.38

100

0.476
  radA Streptococcus mitis NCTC 12261

47.162

100

0.474

Multiple sequence alignment