Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HBA47_RS05210 Genome accession   NZ_CP050136
Coordinates   962144..962950 (+) Length   268 a.a.
NCBI ID   WP_019389016.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 957144..967950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS11415 - 957661..958248 (-) 588 Protein_1011 transposase -
  HBA47_RS05185 (HBA47_05200) - 958266..958529 (-) 264 WP_060536982.1 transposase -
  HBA47_RS05190 (HBA47_05205) - 958950..959153 (-) 204 WP_019389014.1 hypothetical protein -
  HBA47_RS05195 (HBA47_05210) - 959492..960248 (+) 757 WP_154700212.1 IS5 family transposase -
  HBA47_RS05200 (HBA47_05215) rnc 960299..961024 (-) 726 WP_003790491.1 ribonuclease III -
  HBA47_RS05205 (HBA47_05220) rluD 961028..962143 (-) 1116 WP_019389015.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HBA47_RS05210 (HBA47_05225) comL 962144..962950 (+) 807 WP_019389016.1 outer membrane protein assembly factor BamD Machinery gene
  HBA47_RS05215 (HBA47_05230) folP 963050..963889 (+) 840 WP_019389017.1 dihydropteroate synthase -
  HBA47_RS05220 (HBA47_05235) lpdA 963972..965765 (+) 1794 WP_154700211.1 dihydrolipoyl dehydrogenase -
  HBA47_RS05225 (HBA47_05240) - 965844..966539 (+) 696 WP_019389019.1 alpha/beta hydrolase-fold protein -
  HBA47_RS05230 (HBA47_05245) - 966642..966902 (+) 261 WP_003786945.1 phosphopantetheine-binding protein -
  HBA47_RS05235 (HBA47_05250) - 966909..967160 (+) 252 WP_026036201.1 acyl carrier protein -
  HBA47_RS05240 (HBA47_05255) - 967169..967708 (+) 540 WP_003786949.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31127.96 Da        Isoelectric Point: 7.9338

>NTDB_id=430288 HBA47_RS05210 WP_019389016.1 962144..962950(+) (comL) [Kingella kingae strain ATCC 23332]
MKKFLLVISVAAALSACASNTSTVSKDAQLTQNWSNDQLYSEARQELNDGNYTRATALYELLRARQADGRYTEQSLIESA
YAHFKNEEPAKALQNLARFEQNYPASVDMDYALYLKGLVLFAEDQSFLRRLASQDWSDRDPEANRRAFRVFEQLVNRYPN
SKYAEDARKRMAQLVDALGGHEIAIARYYAKRTAYLAANNRAQRILEQFQNTRYVEEALAIMIYTYEQMGNADMAEATRR
VLAQNLPNSPYLQQAWKPDEMPWWRWWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=430288 HBA47_RS05210 WP_019389016.1 962144..962950(+) (comL) [Kingella kingae strain ATCC 23332]
ATGAAAAAATTTCTTCTTGTTATTTCGGTTGCGGCGGCTCTTTCGGCTTGTGCCAGCAACACTTCTACGGTTAGTAAAGA
CGCGCAATTAACGCAAAATTGGTCAAACGACCAACTATACAGCGAAGCGCGTCAGGAATTAAATGACGGCAATTATACAC
GCGCAACGGCGTTATATGAATTGCTACGCGCACGCCAAGCCGATGGTCGCTATACCGAGCAATCTTTGATTGAATCTGCC
TATGCCCATTTTAAAAACGAAGAACCTGCCAAAGCCTTGCAAAATTTAGCACGCTTTGAGCAAAACTACCCTGCCAGCGT
GGATATGGATTACGCGCTATATTTGAAAGGTTTGGTGTTGTTTGCCGAAGACCAATCGTTCCTACGCCGTTTGGCATCAC
AAGACTGGTCAGACCGCGACCCAGAAGCCAACCGCCGCGCATTCCGCGTATTTGAACAGCTGGTTAATCGCTATCCAAAC
AGCAAATATGCCGAAGATGCGCGTAAACGTATGGCGCAGTTGGTTGATGCTTTGGGCGGGCACGAAATCGCGATTGCGCG
TTACTATGCCAAACGCACGGCATATTTAGCCGCCAACAATCGCGCTCAACGCATTTTGGAGCAATTCCAAAACACGCGCT
ATGTGGAAGAAGCGTTGGCGATTATGATTTATACCTACGAGCAAATGGGCAATGCCGATATGGCAGAAGCCACACGCCGC
GTGTTGGCGCAAAACTTGCCCAACAGCCCATATTTGCAGCAGGCGTGGAAACCCGATGAGATGCCTTGGTGGCGTTGGTG
GAAATGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.052

99.627

0.578
  comL Neisseria gonorrhoeae MS11

57.678

99.627

0.575