Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HBA50_RS01645 Genome accession   NZ_CP050133
Coordinates   326009..326503 (+) Length   164 a.a.
NCBI ID   WP_005591685.1    Uniprot ID   A0A0F2CTK7
Organism   Streptococcus cristatus ATCC 51100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 326908..328302 326009..326503 flank 405


Gene organization within MGE regions


Location: 326009..328302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS01645 (HBA50_01645) ssbA 326009..326503 (+) 495 WP_005591685.1 single-stranded DNA-binding protein Machinery gene
  HBA50_RS01650 (HBA50_01650) rpsR 326544..326783 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  HBA50_RS01655 (HBA50_01655) - 326908..328302 (+) 1395 WP_045496874.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18082.84 Da        Isoelectric Point: 4.7079

>NTDB_id=430194 HBA50_RS01645 WP_005591685.1 326009..326503(+) (ssbA) [Streptococcus cristatus ATCC 51100]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYDNQQGQRVYVTEVVADNFQLLESRASREGQPSAGFGGGGFGGNSAPSYGNADSFNQVPNFSRDESPFGNSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=430194 HBA50_RS01645 WP_005591685.1 326009..326503(+) (ssbA) [Streptococcus cristatus ATCC 51100]
ATGATTAATAACGTTGTACTTGTGGGACGTATGACCCGTGATGCTGAACTTCGCTATACACCGCAAAACCAAGCGGTCGC
AACCTTTACTCTGGCTGTTAATCGCAACTTTAAAAATCAAAGTGGTGAGCGTGAAGCGGACTTTATCAATGTTGTTATCT
GGCGTCAGCAGGCAGAAAATCTTGCTAATTGGGCCAAAAAAGGAGCTCTAATCGGAATTACTGGTCGCATCCAGACTCGT
AACTACGACAATCAGCAAGGCCAGCGTGTCTATGTCACAGAAGTCGTTGCAGACAACTTCCAGCTTCTGGAAAGTCGTGC
CAGCCGTGAAGGGCAGCCTTCAGCTGGCTTTGGTGGCGGTGGCTTCGGTGGAAATTCTGCACCAAGCTATGGTAATGCTG
ACTCATTCAACCAAGTACCGAATTTTTCTCGTGATGAAAGCCCATTCGGCAATTCAAATCCGATGGACATCTCAGACGAT
GATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2CTK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.61
  ssb Latilactobacillus sakei subsp. sakei 23K

55.429

100

0.591