Detailed information NTG0430188

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: HBA50_RS00880
• Genome accession: NZ_CP050133
• Coordinates: 169310..169744 (+)
• Length: 144 a.a.
• NCBI ID: WP_045500291.1
• Uniprot ID: -
• Organism: Streptococcus cristatus ATCC 51100
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 164310..174744

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HBA50_RS00845 (HBA50_00845)	comW	164801..165028 (+)	228	WP_045500276.1	sigma(X)-activator ComW	-
HBA50_RS00855 (HBA50_00855)	-	165271..166539 (+)	1269	WP_045500279.1	CapA family protein	-
HBA50_RS00860 (HBA50_00860)	-	166674..167045 (+)	372	WP_045500282.1	DUF1033 family protein	-
HBA50_RS00865 (HBA50_00865)	comYA	167131..168072 (+)	942	WP_045500284.1	competence type IV pilus ATPase ComGA	Machinery gene
HBA50_RS00870 (HBA50_00870)	comYB	168020..169036 (+)	1017	WP_045500287.1	competence type IV pilus assembly protein ComGB	Machinery gene
HBA50_RS00875 (HBA50_00875)	comYC	169033..169350 (+)	318	WP_045500288.1	competence type IV pilus major pilin ComGC	Machinery gene
HBA50_RS00880 (HBA50_00880)	comYD	169310..169744 (+)	435	WP_045500291.1	competence type IV pilus minor pilin ComGD	Machinery gene
HBA50_RS00885 (HBA50_00885)	comGE	169710..170003 (+)	294	WP_200893262.1	competence type IV pilus minor pilin ComGE	-
HBA50_RS00890 (HBA50_00890)	comGF/cglF	169987..170424 (+)	438	WP_045500297.1	competence type IV pilus minor pilin ComGF	Machinery gene
HBA50_RS00895 (HBA50_00895)	comGG	170405..170803 (+)	399	WP_045500299.1	competence type IV pilus minor pilin ComGG	-
HBA50_RS00900 (HBA50_00900)	comYH	170884..171849 (+)	966	WP_045500301.1	class I SAM-dependent methyltransferase	Machinery gene
HBA50_RS00905 (HBA50_00905)	-	171885..173078 (+)	1194	WP_045500304.1	acetate kinase	-
HBA50_RS00910 (HBA50_00910)	-	173389..174279 (-)	891	WP_045500311.1	RluA family pseudouridine synthase	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16236.70 Da
• Isoelectric Point: 9.3351

>NTDB_id=430188 HBA50_RS00880 WP_045500291.1 169310..169744(+) (comYD) [Streptococcus cristatus ATCC 51100]
MEKTAVNLVQLRIKAFTLLESLLALFVVSFILLGLSGSVQAGFNQVQEQLFFMEFEHLYQESQKLSLAGHEKIKLTISER
KISNGYQQVEFPKTLQEHAPQTIQFDQAGGNSSLSKIVFQTEDKKVVYQLYMGNGKFKKTTNGG

Nucleotide

• Length: 435 bp

>NTDB_id=430188 HBA50_RS00880 WP_045500291.1 169310..169744(+) (comYD) [Streptococcus cristatus ATCC 51100]
ATGGAAAAAACAGCAGTGAACCTCGTGCAGTTGCGGATTAAGGCTTTTACGCTGCTGGAAAGTCTCCTAGCCTTATTTGT
AGTCAGTTTCATTTTATTAGGTCTGTCTGGCTCTGTTCAGGCTGGTTTTAATCAGGTGCAGGAGCAGCTGTTTTTCATGG
AATTTGAGCATCTTTATCAGGAGAGCCAAAAGCTGAGTCTAGCTGGGCATGAAAAGATCAAATTGACCATTTCGGAGCGT
AAGATTTCCAATGGCTACCAGCAGGTGGAGTTTCCCAAGACCTTACAGGAGCATGCTCCTCAGACTATTCAGTTTGACCA
GGCTGGCGGGAATTCTTCGCTCAGCAAGATTGTTTTTCAAACGGAGGATAAAAAGGTTGTTTACCAGCTTTATATGGGCA
ATGGAAAGTTTAAAAAGACGACGAATGGAGGCTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	61.268	98.611	0.604
comGD/cglD	Streptococcus mitis NCTC 12261	56.589	89.583	0.507
comGD/cglD	Streptococcus pneumoniae Rx1	56.693	88.194	0.5
comGD/cglD	Streptococcus pneumoniae D39	56.693	88.194	0.5
comGD/cglD	Streptococcus pneumoniae R6	56.693	88.194	0.5
comGD/cglD	Streptococcus mitis SK321	56.693	88.194	0.5
comGD/cglD	Streptococcus pneumoniae TIGR4	55.906	88.194	0.493
comYD	Streptococcus mutans UA140	51.538	90.278	0.465
comYD	Streptococcus mutans UA159	51.538	90.278	0.465
comGD	Lactococcus lactis subsp. cremoris KW2	36.806	100	0.368