Detailed information NTG0430087

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: HAV35_RS10005
• Genome accession: NZ_CP050120
• Coordinates: 1982214..1983482 (-)
• Length: 422 a.a.
• NCBI ID: WP_227086002.1
• Uniprot ID: -
• Organism: Deinococcus radiodurans strain BND-54
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1977214..1988482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HAV35_RS09975 (HAV35_09980)	-	1977486..1978463 (-)	978	WP_027479984.1	alpha/beta hydrolase	-
HAV35_RS09985 (HAV35_09990)	aroQ	1978460..1978891 (-)	432	WP_010887424.1	type II 3-dehydroquinate dehydratase	-
HAV35_RS09990 (HAV35_09995)	aroB	1979040..1980092 (-)	1053	WP_010887423.1	3-dehydroquinate synthase	-
HAV35_RS09995 (HAV35_10000)	-	1980079..1980669 (-)	591	WP_034350371.1	shikimate kinase	-
HAV35_RS10000 (HAV35_10005)	aroC	1980802..1981950 (-)	1149	WP_010887421.1	chorismate synthase	-
HAV35_RS10005 (HAV35_10010)	pilQ	1982214..1983482 (-)	1269	WP_227086002.1	secretin N-terminal domain-containing protein	Machinery gene
HAV35_RS10010 (HAV35_10015)	-	1984440..1986347 (-)	1908	WP_010887419.1	hypothetical protein	-
HAV35_RS10015 (HAV35_10020)	pilO	1986344..1987003 (-)	660	WP_010887418.1	type II secretion system protein M	-
HAV35_RS10020 (HAV35_10025)	-	1987000..1987716 (-)	717	WP_010887417.1	hypothetical protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 44190.66 Da
• Isoelectric Point: 5.4747

>NTDB_id=430087 HAV35_RS10005 WP_227086002.1 1982214..1983482(-) (pilQ) [Deinococcus radiodurans strain BND-54]
MQRIYTVRGQAADITALLAAQYPTLRVTPVGQTGQLVLNGAQAQLDTALALLEQVDRPAPVAESRTVQRVFQLVNASAEE
VKATLEGTLARDLTADSNNDVLPNVPVTATDANGNTTVVSVPNALGKTANQGTANAQAQTAQTPANTQQATLIADKRTNS
LIVRGTPEQVAQVAELVPQLDQVVPQINVQVRIQEVNERALQSLGLNWRATFGGFNVAVSGGTGLAATFNPTQSFLGFNI
FPTLTALETQGLTRRVYDGNVTMQSGQRSLSATGGAQNASSGAAASVKSGGRLEINIPSAAGNIVRQIDYGLNLDFFSPQ
VAPDGTITLRIRGQVNQPATAITADSLPNLIDFTNSEAQSTITFKNGQTILMSGLLGSTETTNRSGVPFLSSLPGVGAAF
GEKRTEKTQSQLLVIITGTVVK

Nucleotide

• Length: 1269 bp

>NTDB_id=430087 HAV35_RS10005 WP_227086002.1 1982214..1983482(-) (pilQ) [Deinococcus radiodurans strain BND-54]
GTGCAGCGCATCTACACCGTGCGCGGCCAGGCCGCCGACATCACGGCGCTGCTCGCTGCCCAGTACCCTACCCTGCGCGT
GACCCCGGTGGGGCAGACCGGCCAACTGGTGCTCAACGGCGCTCAGGCCCAGCTCGACACGGCGCTCGCCCTGCTCGAAC
AGGTGGACCGCCCCGCCCCGGTGGCCGAGTCCCGTACCGTTCAGCGCGTCTTCCAGCTCGTCAACGCCAGCGCTGAGGAA
GTCAAGGCGACCCTGGAAGGCACCCTGGCGCGTGACCTGACCGCCGACAGCAATAACGACGTGCTGCCCAACGTGCCCGT
CACCGCCACCGACGCCAACGGCAACACGACCGTGGTGAGCGTGCCCAACGCGCTCGGCAAGACGGCGAACCAGGGCACGG
CGAATGCTCAGGCTCAGACTGCCCAGACTCCGGCCAACACCCAGCAGGCGACCCTGATCGCCGACAAGCGCACCAACAGC
CTGATCGTGCGCGGCACGCCCGAACAGGTGGCGCAGGTGGCCGAGCTGGTGCCGCAGCTCGATCAGGTGGTGCCGCAGAT
CAACGTGCAGGTGCGGATTCAGGAGGTCAACGAGCGAGCGCTGCAATCGCTGGGCCTCAACTGGCGGGCGACCTTCGGTG
GCTTCAACGTGGCGGTCTCGGGCGGCACCGGGCTGGCGGCCACCTTCAACCCCACCCAGAGCTTCCTCGGTTTCAACATT
TTCCCGACCCTCACGGCGCTCGAAACCCAGGGCCTGACCCGGCGCGTGTACGACGGCAACGTGACCATGCAAAGCGGCCA
GCGCTCGCTGAGTGCCACGGGCGGCGCCCAGAACGCTTCGAGCGGCGCGGCGGCCAGCGTCAAGAGTGGGGGCCGACTGG
AAATCAACATCCCCTCGGCGGCGGGCAACATCGTGCGGCAGATCGATTACGGTCTCAACCTCGATTTCTTCAGCCCGCAG
GTGGCGCCCGACGGCACCATCACCCTGCGTATTCGCGGTCAGGTCAACCAGCCGGCAACGGCGATCACCGCCGACAGCCT
GCCCAACCTCATCGACTTCACCAACAGCGAAGCGCAAAGCACCATCACCTTCAAGAACGGCCAGACCATCCTGATGAGCG
GCCTGCTCGGCAGCACCGAGACCACCAACCGCAGCGGCGTGCCCTTCCTGAGCAGCCTGCCCGGTGTGGGCGCGGCCTTC
GGGGAAAAACGCACCGAGAAGACCCAGTCGCAACTGCTCGTCATCATCACCGGCACCGTCGTCAAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (279-422)

• Bacterial type II/III secretion system short domain (Secretin_N) (69-185)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	100	100	1