Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   IF728_RS07960 Genome accession   NZ_CP062411
Coordinates   1573597..1574193 (-) Length   198 a.a.
NCBI ID   WP_000559159.1    Uniprot ID   Q99WC3
Organism   Staphylococcus aureus strain NAS_AN_204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1568597..1579193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF728_RS07955 (IF728_07910) - 1573287..1573392 (-) 106 Protein_1529 hypothetical protein -
  IF728_RS07960 (IF728_07915) recR 1573597..1574193 (-) 597 WP_000559159.1 recombination mediator RecR Machinery gene
  IF728_RS07965 (IF728_07920) - 1574200..1574517 (-) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  IF728_RS07970 (IF728_07925) dnaX 1574607..1576304 (-) 1698 WP_001109040.1 DNA polymerase III subunit gamma/tau -
  IF728_RS07975 (IF728_07930) - 1576373..1576897 (-) 525 WP_001167828.1 N-acetyltransferase -
  IF728_RS07980 (IF728_07935) - 1577035..1577136 (-) 102 WP_001790661.1 hypothetical protein -
  IF728_RS07990 (IF728_07945) treR 1577540..1578268 (-) 729 WP_001118675.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22072.49 Da        Isoelectric Point: 4.7564

>NTDB_id=430002 IF728_RS07960 WP_000559159.1 1573597..1574193(-) (recR) [Staphylococcus aureus strain NAS_AN_204]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKSDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=430002 IF728_RS07960 WP_000559159.1 1573597..1574193(-) (recR) [Staphylococcus aureus strain NAS_AN_204]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAACAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCACCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAGCG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q99WC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475