Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IF734_RS02140 Genome accession   NZ_CP062409
Coordinates   398713..399399 (+) Length   228 a.a.
NCBI ID   WP_001802022.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_239     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 393713..404399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF734_RS02105 (IF734_02105) yqeH 394240..395340 (+) 1101 WP_001280137.1 ribosome biogenesis GTPase YqeH -
  IF734_RS02110 (IF734_02110) aroE 395354..396160 (+) 807 WP_000666757.1 shikimate dehydrogenase -
  IF734_RS02115 (IF734_02115) yhbY 396164..396454 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  IF734_RS02120 (IF734_02120) nadD 396457..397026 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  IF734_RS02125 (IF734_02125) yqeK 397016..397600 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  IF734_RS02130 (IF734_02130) rsfS 397601..397954 (+) 354 WP_240053383.1 ribosome silencing factor -
  IF734_RS02135 (IF734_02135) - 397957..398673 (+) 717 WP_000084830.1 class I SAM-dependent methyltransferase -
  IF734_RS02140 (IF734_02140) comEA 398713..399399 (+) 687 WP_001802022.1 ComEA family DNA-binding protein Machinery gene
  IF734_RS02145 (IF734_02145) - 399491..399952 (+) 462 WP_000439693.1 ComE operon protein 2 -
  IF734_RS02150 (IF734_02150) comEC 399957..402158 (+) 2202 WP_001557362.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF734_RS02155 (IF734_02155) holA 402215..403189 (+) 975 WP_001282563.1 DNA polymerase III subunit delta -
  IF734_RS02160 (IF734_02160) rpsT 403234..403485 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25900.65 Da        Isoelectric Point: 9.6751

>NTDB_id=429769 IF734_RS02140 WP_001802022.1 398713..399399(+) (comEA) [Staphylococcus aureus strain NAS_AN_239]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=429769 IF734_RS02140 WP_001802022.1 398713..399399(+) (comEA) [Staphylococcus aureus strain NAS_AN_239]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

100

1
  comEA Staphylococcus aureus MW2

97.368

100

0.974