Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BDGL_002557 Genome accession   NC_016603
Coordinates   2748261..2748890 (+) Length   209 a.a.
NCBI ID   YP_004996825.1    Uniprot ID   F0KFA9
Organism   Acinetobacter pittii PHEA-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2743261..2753890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_002554 - 2744324..2745307 (-) 984 YP_004996822.1 hypothetical protein -
  BDGL_002555 - 2745387..2746202 (-) 816 YP_004996823.1 hypothetical protein -
  BDGL_002556 recG 2746223..2748268 (+) 2046 YP_004996824.1 ATP-dependent DNA helicase -
  BDGL_002557 comF 2748261..2748890 (+) 630 YP_004996825.1 amidophosphoribosyltransferase Machinery gene
  BDGL_002558 mutT 2748892..2749293 (-) 402 YP_004996826.1 mutator MutT protein -
  BDGL_002559 - 2749308..2749889 (-) 582 YP_004996827.1 hypothetical protein -
  BDGL_002560 corA 2750048..2751061 (+) 1014 YP_004996828.1 magnesium and cobalt transport protein -
  BDGL_002561 - 2751134..2751421 (-) 288 YP_004996829.1 hypothetical protein -
  BDGL_002562 ttg2D 2751433..2752026 (-) 594 YP_004996830.1 putative toluene tolerance protein -
  BDGL_002563 ttg2C 2752100..2752783 (-) 684 YP_004996831.1 toluene tolerance efflux transporter (ABC superfamily, PerI-bind) -
  BDGL_002564 ttg2B 2752783..2753559 (-) 777 YP_004996832.1 toluene tolerance efflux transporter (ABC superfamily, membrane) -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24407.65 Da        Isoelectric Point: 9.8065

>NTDB_id=42975 BDGL_002557 YP_004996825.1 2748261..2748890(+) (comF) [Acinetobacter pittii PHEA-2]
MFSFLNFQPLIQLFSPCSLCELGAREKYSLCKDCWEQLPWLKQTIQRNNQPILVACDYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLVLANILSKHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHMACLAATLKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=42975 BDGL_002557 YP_004996825.1 2748261..2748890(+) (comF) [Acinetobacter pittii PHEA-2]
ATGTTTAGTTTTTTAAACTTCCAACCTCTTATTCAGTTATTTTCACCTTGCTCACTGTGCGAGTTAGGTGCGCGAGAAAA
ATATTCTCTTTGTAAAGACTGTTGGGAACAGCTGCCTTGGCTTAAACAAACGATTCAACGTAATAATCAACCTATCCTTG
TAGCCTGTGACTATGCTTATCCAGTTAACCGTATTATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAATCTTA
TTAGGGGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCCTTAGTACTCGCCAATATATTAAGCAAACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGCTTAAATGAACACTCTCAAAAAGGACTTTCTCGGCTAGAACGCTTTGAAAATATCGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCTATTCACATGGCTTGCCTAGCGGCAACACTAAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KFA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

84.466

98.565

0.833
  comF Acinetobacter baumannii D1279779

83.495

98.565

0.823

Multiple sequence alignment