Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   BDGL_000954 Genome accession   NC_016603
Coordinates   1002300..1003055 (+) Length   251 a.a.
NCBI ID   YP_004995222.1    Uniprot ID   F0KMC9
Organism   Acinetobacter pittii PHEA-2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 997300..1008055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_000947 kdsB 997826..998587 (+) 762 YP_004995215.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BDGL_000948 holB 998601..999581 (+) 981 YP_004995216.1 DNA polymerase III subunit delta' -
  BDGL_000949 pilZ 999592..999933 (+) 342 YP_004995217.1 type 4 fimbrial biogenesis protein -
  BDGL_000950 ycfH 999951..1000724 (+) 774 YP_004995218.1 putative deoxyribonuclease -
  BDGL_000951 - 1000761..1001369 (+) 609 YP_004995219.1 hypothetical protein -
  BDGL_000952 - 1001376..1001930 (+) 555 YP_004995220.1 putative general secretion pathway protein G precursor -
  BDGL_000953 xcpV 1001920..1002300 (+) 381 YP_004995221.1 general type II secretion pathway protein I precursor (PilD-dependent protein PddC) Machinery gene
  BDGL_000954 xcpW 1002300..1003055 (+) 756 YP_004995222.1 general secretion pathway protein J Machinery gene
  BDGL_000955 xcpX 1003056..1004015 (+) 960 YP_004995223.1 general secretion pathway protein K -
  BDGL_000956 - 1004244..1004840 (+) 597 YP_004995224.1 6-pyruvoyl-tetrahydropterin synthase -
  BDGL_000957 ung 1004894..1005607 (+) 714 YP_004995225.1 uracil-DNA glycosylase -
  BDGL_000958 hibch 1005604..1006728 (+) 1125 YP_004995226.1 putative enoyl-CoA hydratase/isomerase -
  BDGL_000959 yfhC 1006734..1007237 (+) 504 YP_004995227.1 tRNA-specific adenosine deaminase -
  BDGL_000960 - 1007308..1007748 (+) 441 YP_004995228.1 hypothetical protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28750.95 Da        Isoelectric Point: 9.8689

>NTDB_id=42967 BDGL_000954 YP_004995222.1 1002300..1003055(+) (xcpW) [Acinetobacter pittii PHEA-2]
MIKNKSFRSPSSASRLAVRSEQMMRGYSEQSSSSCAQTKLRFVNPRSGFTLVELLVSIAIFAILSLLGWKVFDYLLKVRD
RNTQHEVQLFELQDAYQQVLRDTLQIIPLSANQGGQLRPALEIDNQVLRFSKAGVTDPLKQGLSPFERIEYRYDPDQKKL
YRLKYSNLNTSNREQPLSSTLLSQVEQFQIMVLTPQEVTKWPEVNIDPTKPDEFRKLPKGIKMQLTVAGVNYEWIYSLNQ
GDLSLSKQGGQ

Nucleotide


Download         Length: 756 bp        

>NTDB_id=42967 BDGL_000954 YP_004995222.1 1002300..1003055(+) (xcpW) [Acinetobacter pittii PHEA-2]
ATGATAAAGAATAAAAGTTTTCGCTCTCCAAGCTCAGCTTCACGTCTTGCGGTACGATCGGAGCAGATGATGAGGGGTTA
CTCCGAGCAAAGCTCTTCGTCTTGTGCTCAGACAAAGCTTCGCTTTGTTAATCCTCGCTCAGGATTTACTTTAGTTGAGC
TTTTAGTTTCAATTGCAATTTTTGCTATTTTATCTTTGTTGGGTTGGAAGGTTTTTGACTATTTATTAAAAGTTCGCGAT
CGTAATACTCAACATGAAGTGCAGCTATTTGAATTACAAGATGCTTATCAACAAGTTTTGCGTGATACATTGCAAATTAT
ACCTTTATCAGCCAATCAAGGCGGGCAATTACGTCCAGCTTTAGAGATTGATAATCAAGTTCTCCGCTTTAGTAAGGCGG
GTGTTACTGATCCATTAAAGCAAGGATTATCACCTTTTGAGCGTATCGAATATCGATATGATCCTGATCAAAAAAAGCTT
TATCGCCTTAAATATAGTAACTTAAATACTTCAAATAGAGAGCAACCCTTATCAAGTACGCTGTTGAGCCAAGTTGAACA
ATTTCAAATTATGGTTTTGACACCTCAAGAAGTAACAAAGTGGCCTGAAGTTAATATTGACCCTACAAAACCTGATGAAT
TTAGGAAGTTGCCAAAAGGAATAAAAATGCAACTCACGGTTGCAGGTGTAAATTATGAGTGGATTTATAGCTTAAACCAA
GGTGACTTATCGCTCTCCAAACAGGGAGGTCAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(45-67)

Type II secretion system (T2SS), protein J (T2SSJ)

(101-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KMC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

80

99.602

0.797

Multiple sequence alignment