Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G9P49_RS14085 Genome accession   NZ_CP050036
Coordinates   2891230..2891859 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 58-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2886230..2896859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9P49_RS14070 (G9P49_14075) helD 2886472..2888526 (-) 2055 WP_001295354.1 DNA helicase IV -
  G9P49_RS14075 (G9P49_14080) yccF 2888649..2889095 (+) 447 WP_001261235.1 YccF domain-containing protein -
  G9P49_RS14080 (G9P49_14085) yccS 2889105..2891267 (+) 2163 WP_000875061.1 YccS family putative transporter -
  G9P49_RS14085 (G9P49_14090) sxy/tfoX 2891230..2891859 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G9P49_RS14090 (G9P49_14095) sulA 2892078..2892587 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  G9P49_RS14095 (G9P49_14100) ompA 2892944..2893984 (+) 1041 WP_000750416.1 porin OmpA -
  G9P49_RS14100 (G9P49_14105) matP 2894060..2894512 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  G9P49_RS14105 (G9P49_14110) ycbZ 2894698..2896458 (+) 1761 WP_001489425.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=429657 G9P49_RS14085 WP_000839153.1 2891230..2891859(-) (sxy/tfoX) [Escherichia coli strain 58-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=429657 G9P49_RS14085 WP_000839153.1 2891230..2891859(-) (sxy/tfoX) [Escherichia coli strain 58-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1